Experiment: R2A with Fusidic 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03790 and CA265_RS03795 overlap by 4 nucleotides CA265_RS03795 and CA265_RS03800 are separated by 387 nucleotides CA265_RS03800 and CA265_RS03805 are separated by 159 nucleotides CA265_RS03805 and CA265_RS03810 are separated by 6 nucleotides
CA265_RS03790: CA265_RS03790 - hypothetical protein, at 897,272 to 897,769
_RS03790
CA265_RS03795: CA265_RS03795 - hypothetical protein, at 897,766 to 898,158
_RS03795
CA265_RS03800: CA265_RS03800 - TetR family transcriptional regulator, at 898,546 to 899,169
_RS03800
CA265_RS03805: CA265_RS03805 - hypothetical protein, at 899,329 to 899,586
_RS03805
CA265_RS03810: CA265_RS03810 - hypothetical protein, at 899,593 to 900,336
_RS03810
Position (kb) 898
899
900 Strain fitness (log2 ratio) -1
0
1
2 at 897.604 kb on + strand, within CA265_RS03790 at 897.604 kb on + strand, within CA265_RS03790 at 897.604 kb on + strand, within CA265_RS03790 at 897.710 kb on + strand, within CA265_RS03790 at 897.781 kb on - strand at 897.786 kb on + strand at 897.786 kb on + strand at 897.856 kb on + strand, within CA265_RS03795 at 897.865 kb on + strand, within CA265_RS03795 at 897.912 kb on + strand, within CA265_RS03795 at 897.913 kb on - strand, within CA265_RS03795 at 897.913 kb on - strand, within CA265_RS03795 at 897.944 kb on - strand, within CA265_RS03795 at 897.958 kb on - strand, within CA265_RS03795 at 897.958 kb on - strand, within CA265_RS03795 at 897.959 kb on + strand, within CA265_RS03795 at 897.960 kb on - strand, within CA265_RS03795 at 897.960 kb on - strand, within CA265_RS03795 at 897.964 kb on - strand at 897.990 kb on + strand, within CA265_RS03795 at 898.034 kb on - strand, within CA265_RS03795 at 898.044 kb on - strand, within CA265_RS03795 at 898.047 kb on + strand, within CA265_RS03795 at 898.048 kb on - strand, within CA265_RS03795 at 898.096 kb on - strand, within CA265_RS03795 at 898.198 kb on + strand at 898.215 kb on + strand at 898.237 kb on + strand at 898.243 kb on - strand at 898.321 kb on + strand at 898.349 kb on + strand at 898.374 kb on - strand at 898.391 kb on + strand at 898.470 kb on - strand at 898.489 kb on + strand at 898.496 kb on - strand at 898.499 kb on + strand at 898.499 kb on + strand at 898.500 kb on - strand at 898.561 kb on - strand at 898.579 kb on - strand at 898.656 kb on - strand, within CA265_RS03800 at 898.668 kb on - strand, within CA265_RS03800 at 898.920 kb on + strand, within CA265_RS03800 at 898.921 kb on - strand, within CA265_RS03800 at 898.923 kb on + strand, within CA265_RS03800 at 898.924 kb on - strand, within CA265_RS03800 at 899.007 kb on - strand, within CA265_RS03800 at 899.011 kb on - strand, within CA265_RS03800 at 899.013 kb on - strand, within CA265_RS03800 at 899.013 kb on - strand, within CA265_RS03800 at 899.013 kb on - strand, within CA265_RS03800 at 899.170 kb on - strand at 899.170 kb on - strand at 899.245 kb on + strand at 899.246 kb on - strand at 899.248 kb on - strand at 899.282 kb on + strand at 899.372 kb on + strand, within CA265_RS03805 at 899.374 kb on + strand, within CA265_RS03805 at 899.447 kb on + strand, within CA265_RS03805 at 899.448 kb on - strand, within CA265_RS03805 at 899.452 kb on + strand, within CA265_RS03805 at 899.492 kb on + strand, within CA265_RS03805 at 899.499 kb on + strand, within CA265_RS03805 at 899.550 kb on + strand, within CA265_RS03805 at 899.609 kb on + strand at 899.610 kb on - strand at 899.638 kb on + strand at 899.668 kb on - strand, within CA265_RS03810 at 899.730 kb on - strand, within CA265_RS03810 at 899.796 kb on + strand, within CA265_RS03810 at 899.880 kb on + strand, within CA265_RS03810 at 899.881 kb on - strand, within CA265_RS03810 at 899.893 kb on - strand, within CA265_RS03810 at 899.893 kb on - strand, within CA265_RS03810 at 899.950 kb on - strand, within CA265_RS03810 at 900.013 kb on - strand, within CA265_RS03810 at 900.037 kb on - strand, within CA265_RS03810 at 900.125 kb on - strand, within CA265_RS03810 at 900.147 kb on - strand, within CA265_RS03810
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusidic 0.001 mg/ml remove 897,604 + CA265_RS03790 0.67 +0.1 897,604 + CA265_RS03790 0.67 -0.4 897,604 + CA265_RS03790 0.67 -0.5 897,710 + CA265_RS03790 0.88 -0.1 897,781 - -0.1 897,786 + -0.3 897,786 + -0.2 897,856 + CA265_RS03795 0.23 +0.0 897,865 + CA265_RS03795 0.25 +0.7 897,912 + CA265_RS03795 0.37 +0.4 897,913 - CA265_RS03795 0.37 -0.1 897,913 - CA265_RS03795 0.37 -0.7 897,944 - CA265_RS03795 0.45 -0.0 897,958 - CA265_RS03795 0.49 -0.3 897,958 - CA265_RS03795 0.49 -0.4 897,959 + CA265_RS03795 0.49 -0.5 897,960 - CA265_RS03795 0.49 +0.6 897,960 - CA265_RS03795 0.49 +0.8 897,964 - -0.4 897,990 + CA265_RS03795 0.57 +0.1 898,034 - CA265_RS03795 0.68 +0.2 898,044 - CA265_RS03795 0.71 -1.4 898,047 + CA265_RS03795 0.72 -1.4 898,048 - CA265_RS03795 0.72 +0.7 898,096 - CA265_RS03795 0.84 -0.8 898,198 + -0.3 898,215 + +0.6 898,237 + +0.5 898,243 - +0.8 898,321 + +0.6 898,349 + -0.3 898,374 - -0.7 898,391 + -1.2 898,470 - -1.0 898,489 + +0.8 898,496 - +0.0 898,499 + +0.2 898,499 + -0.6 898,500 - -0.5 898,561 - +0.3 898,579 - -0.1 898,656 - CA265_RS03800 0.18 -0.5 898,668 - CA265_RS03800 0.20 -0.6 898,920 + CA265_RS03800 0.60 -0.1 898,921 - CA265_RS03800 0.60 -0.9 898,923 + CA265_RS03800 0.60 -0.6 898,924 - CA265_RS03800 0.61 -0.6 899,007 - CA265_RS03800 0.74 +0.9 899,011 - CA265_RS03800 0.75 +0.2 899,013 - CA265_RS03800 0.75 +0.0 899,013 - CA265_RS03800 0.75 -0.4 899,013 - CA265_RS03800 0.75 -0.7 899,170 - -0.4 899,170 - +0.6 899,245 + -0.4 899,246 - -0.3 899,248 - +0.2 899,282 + +0.7 899,372 + CA265_RS03805 0.17 -0.5 899,374 + CA265_RS03805 0.17 -0.0 899,447 + CA265_RS03805 0.46 -0.1 899,448 - CA265_RS03805 0.46 -0.5 899,452 + CA265_RS03805 0.48 -0.9 899,492 + CA265_RS03805 0.63 +0.8 899,499 + CA265_RS03805 0.66 -0.1 899,550 + CA265_RS03805 0.86 -1.3 899,609 + +0.1 899,610 - -0.7 899,638 + -0.9 899,668 - CA265_RS03810 0.10 +0.4 899,730 - CA265_RS03810 0.18 -1.2 899,796 + CA265_RS03810 0.27 -0.4 899,880 + CA265_RS03810 0.39 -0.2 899,881 - CA265_RS03810 0.39 +0.1 899,893 - CA265_RS03810 0.40 -0.5 899,893 - CA265_RS03810 0.40 +2.0 899,950 - CA265_RS03810 0.48 -0.1 900,013 - CA265_RS03810 0.56 +0.4 900,037 - CA265_RS03810 0.60 -0.5 900,125 - CA265_RS03810 0.72 -0.8 900,147 - CA265_RS03810 0.74 -0.5
Or see this region's nucleotide sequence