Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS03260

Experiment: R2A with Fusidic 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS03255 and CA265_RS03260 are separated by 80 nucleotidesCA265_RS03260 and CA265_RS03265 are separated by 3 nucleotidesCA265_RS03265 and CA265_RS03270 are separated by 241 nucleotides CA265_RS03255: CA265_RS03255 - glycerophosphodiester phosphodiesterase, at 798,705 to 799,625 _RS03255 CA265_RS03260: CA265_RS03260 - multidrug ABC transporter ATP-binding protein, at 799,706 to 800,413 _RS03260 CA265_RS03265: CA265_RS03265 - hypothetical protein, at 800,417 to 800,959 _RS03265 CA265_RS03270: CA265_RS03270 - hypothetical protein, at 801,201 to 801,722 _RS03270 Position (kb) 799 800 801Strain fitness (log2 ratio) -1 0 1 2 3at 798.735 kb on - strandat 798.735 kb on - strandat 798.784 kb on - strandat 798.784 kb on - strandat 798.784 kb on - strandat 798.785 kb on + strandat 798.798 kb on - strand, within CA265_RS03255at 798.812 kb on - strand, within CA265_RS03255at 798.964 kb on - strand, within CA265_RS03255at 798.990 kb on - strand, within CA265_RS03255at 799.050 kb on + strand, within CA265_RS03255at 799.061 kb on - strand, within CA265_RS03255at 799.071 kb on - strand, within CA265_RS03255at 799.121 kb on - strand, within CA265_RS03255at 799.129 kb on + strand, within CA265_RS03255at 799.129 kb on + strand, within CA265_RS03255at 799.130 kb on - strand, within CA265_RS03255at 799.130 kb on - strand, within CA265_RS03255at 799.133 kb on - strand, within CA265_RS03255at 799.251 kb on + strand, within CA265_RS03255at 799.251 kb on + strand, within CA265_RS03255at 799.252 kb on - strand, within CA265_RS03255at 799.252 kb on - strand, within CA265_RS03255at 799.276 kb on + strand, within CA265_RS03255at 799.277 kb on - strand, within CA265_RS03255at 799.342 kb on + strand, within CA265_RS03255at 799.343 kb on - strand, within CA265_RS03255at 799.375 kb on + strand, within CA265_RS03255at 799.376 kb on - strand, within CA265_RS03255at 799.391 kb on - strand, within CA265_RS03255at 799.420 kb on - strand, within CA265_RS03255at 799.440 kb on - strand, within CA265_RS03255at 799.451 kb on - strand, within CA265_RS03255at 799.506 kb on + strand, within CA265_RS03255at 799.510 kb on - strand, within CA265_RS03255at 799.536 kb on - strandat 799.587 kb on - strandat 799.591 kb on - strandat 799.593 kb on - strandat 799.614 kb on + strandat 799.616 kb on + strandat 799.619 kb on + strandat 799.619 kb on + strandat 799.619 kb on + strandat 799.676 kb on + strandat 799.677 kb on - strandat 799.684 kb on + strandat 799.685 kb on - strandat 799.732 kb on + strandat 799.825 kb on + strand, within CA265_RS03260at 799.831 kb on + strand, within CA265_RS03260at 799.843 kb on + strand, within CA265_RS03260at 799.843 kb on + strand, within CA265_RS03260at 799.861 kb on - strand, within CA265_RS03260at 799.915 kb on + strand, within CA265_RS03260at 799.915 kb on + strand, within CA265_RS03260at 799.934 kb on - strand, within CA265_RS03260at 799.964 kb on + strand, within CA265_RS03260at 799.972 kb on + strand, within CA265_RS03260at 799.972 kb on + strand, within CA265_RS03260at 799.973 kb on - strand, within CA265_RS03260at 799.973 kb on - strand, within CA265_RS03260at 799.973 kb on - strand, within CA265_RS03260at 799.976 kb on + strand, within CA265_RS03260at 799.976 kb on + strand, within CA265_RS03260at 799.977 kb on - strand, within CA265_RS03260at 800.021 kb on - strand, within CA265_RS03260at 800.021 kb on - strand, within CA265_RS03260at 800.033 kb on - strand, within CA265_RS03260at 800.235 kb on + strand, within CA265_RS03260at 800.257 kb on + strand, within CA265_RS03260at 800.257 kb on + strand, within CA265_RS03260at 800.258 kb on - strand, within CA265_RS03260at 800.303 kb on - strand, within CA265_RS03260at 800.303 kb on - strand, within CA265_RS03260at 800.421 kb on - strandat 800.473 kb on + strand, within CA265_RS03265at 800.521 kb on - strand, within CA265_RS03265at 800.578 kb on - strand, within CA265_RS03265at 800.578 kb on - strand, within CA265_RS03265at 800.596 kb on - strand, within CA265_RS03265at 800.684 kb on + strand, within CA265_RS03265at 800.685 kb on - strand, within CA265_RS03265at 800.685 kb on - strand, within CA265_RS03265at 800.685 kb on - strand, within CA265_RS03265at 800.787 kb on + strandat 800.856 kb on + strandat 800.861 kb on + strand, within CA265_RS03265at 800.861 kb on + strand, within CA265_RS03265at 800.964 kb on + strandat 800.965 kb on - strandat 800.971 kb on - strandat 801.001 kb on - strandat 801.045 kb on + strandat 801.173 kb on - strandat 801.177 kb on - strandat 801.187 kb on - strandat 801.223 kb on + strandat 801.292 kb on + strand, within CA265_RS03270at 801.293 kb on - strand, within CA265_RS03270at 801.327 kb on - strand, within CA265_RS03270

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Fusidic 0.001 mg/ml
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798,735 - +0.7
798,735 - -0.5
798,784 - +1.3
798,784 - +0.3
798,784 - +1.8
798,785 + +0.1
798,798 - CA265_RS03255 0.10 +0.6
798,812 - CA265_RS03255 0.12 -0.7
798,964 - CA265_RS03255 0.28 -0.7
798,990 - CA265_RS03255 0.31 -0.8
799,050 + CA265_RS03255 0.37 +0.2
799,061 - CA265_RS03255 0.39 -0.6
799,071 - CA265_RS03255 0.40 +0.4
799,121 - CA265_RS03255 0.45 -0.1
799,129 + CA265_RS03255 0.46 +0.4
799,129 + CA265_RS03255 0.46 -0.2
799,130 - CA265_RS03255 0.46 -0.1
799,130 - CA265_RS03255 0.46 +0.3
799,133 - CA265_RS03255 0.46 +0.5
799,251 + CA265_RS03255 0.59 +0.7
799,251 + CA265_RS03255 0.59 -0.1
799,252 - CA265_RS03255 0.59 +0.8
799,252 - CA265_RS03255 0.59 +0.4
799,276 + CA265_RS03255 0.62 -0.4
799,277 - CA265_RS03255 0.62 -0.5
799,342 + CA265_RS03255 0.69 +0.4
799,343 - CA265_RS03255 0.69 +0.0
799,375 + CA265_RS03255 0.73 +0.4
799,376 - CA265_RS03255 0.73 +0.0
799,391 - CA265_RS03255 0.74 +0.6
799,420 - CA265_RS03255 0.78 +1.1
799,440 - CA265_RS03255 0.80 +1.0
799,451 - CA265_RS03255 0.81 +0.7
799,506 + CA265_RS03255 0.87 -1.0
799,510 - CA265_RS03255 0.87 -0.3
799,536 - +0.7
799,587 - +0.1
799,591 - -0.2
799,593 - -0.5
799,614 + +0.3
799,616 + +1.0
799,619 + -0.3
799,619 + +0.7
799,619 + +1.3
799,676 + -0.2
799,677 - -0.4
799,684 + -0.7
799,685 - -0.2
799,732 + +0.3
799,825 + CA265_RS03260 0.17 -0.1
799,831 + CA265_RS03260 0.18 +0.7
799,843 + CA265_RS03260 0.19 -0.0
799,843 + CA265_RS03260 0.19 +1.0
799,861 - CA265_RS03260 0.22 +0.8
799,915 + CA265_RS03260 0.30 -0.0
799,915 + CA265_RS03260 0.30 +1.7
799,934 - CA265_RS03260 0.32 +0.7
799,964 + CA265_RS03260 0.36 +1.3
799,972 + CA265_RS03260 0.38 +1.7
799,972 + CA265_RS03260 0.38 +0.2
799,973 - CA265_RS03260 0.38 -0.1
799,973 - CA265_RS03260 0.38 +0.5
799,973 - CA265_RS03260 0.38 -0.0
799,976 + CA265_RS03260 0.38 +0.8
799,976 + CA265_RS03260 0.38 -0.3
799,977 - CA265_RS03260 0.38 +1.1
800,021 - CA265_RS03260 0.44 +0.6
800,021 - CA265_RS03260 0.44 -0.5
800,033 - CA265_RS03260 0.46 +0.2
800,235 + CA265_RS03260 0.75 -0.8
800,257 + CA265_RS03260 0.78 +0.2
800,257 + CA265_RS03260 0.78 +0.4
800,258 - CA265_RS03260 0.78 +0.3
800,303 - CA265_RS03260 0.84 -0.0
800,303 - CA265_RS03260 0.84 +0.1
800,421 - +0.1
800,473 + CA265_RS03265 0.10 +0.8
800,521 - CA265_RS03265 0.19 +0.8
800,578 - CA265_RS03265 0.30 -0.8
800,578 - CA265_RS03265 0.30 -0.8
800,596 - CA265_RS03265 0.33 +1.5
800,684 + CA265_RS03265 0.49 +0.4
800,685 - CA265_RS03265 0.49 +1.0
800,685 - CA265_RS03265 0.49 -0.1
800,685 - CA265_RS03265 0.49 -0.3
800,787 + +3.7
800,856 + +1.7
800,861 + CA265_RS03265 0.82 +0.9
800,861 + CA265_RS03265 0.82 +0.2
800,964 + +0.1
800,965 - -0.8
800,971 - -0.1
801,001 - +0.1
801,045 + -1.3
801,173 - -0.2
801,177 - -0.4
801,187 - +0.3
801,223 + +0.4
801,292 + CA265_RS03270 0.17 +0.3
801,293 - CA265_RS03270 0.18 -1.2
801,327 - CA265_RS03270 0.24 -0.2

Or see this region's nucleotide sequence