Experiment: R2A with Fusidic 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00460 and CA265_RS00465 are separated by 2 nucleotides CA265_RS00465 and CA265_RS00470 are separated by 83 nucleotides CA265_RS00470 and CA265_RS00475 are separated by 29 nucleotides
CA265_RS00460: CA265_RS00460 - alpha/beta hydrolase, at 99,416 to 100,477
_RS00460
CA265_RS00465: CA265_RS00465 - cupin, at 100,480 to 100,956
_RS00465
CA265_RS00470: CA265_RS00470 - hypothetical protein, at 101,040 to 101,687
_RS00470
CA265_RS00475: CA265_RS00475 - isoquinoline 1-oxidoreductase, at 101,717 to 103,978
_RS00475
Position (kb) 100
101 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 99.488 kb on - strand at 99.488 kb on - strand at 99.517 kb on + strand at 99.517 kb on + strand at 99.527 kb on + strand, within CA265_RS00460 at 99.527 kb on + strand, within CA265_RS00460 at 99.584 kb on + strand, within CA265_RS00460 at 99.585 kb on - strand, within CA265_RS00460 at 99.585 kb on - strand, within CA265_RS00460 at 99.623 kb on - strand, within CA265_RS00460 at 99.713 kb on + strand, within CA265_RS00460 at 99.740 kb on + strand, within CA265_RS00460 at 99.741 kb on - strand, within CA265_RS00460 at 99.745 kb on + strand, within CA265_RS00460 at 99.801 kb on + strand, within CA265_RS00460 at 99.801 kb on + strand, within CA265_RS00460 at 99.851 kb on - strand, within CA265_RS00460 at 99.854 kb on - strand, within CA265_RS00460 at 99.861 kb on - strand, within CA265_RS00460 at 99.919 kb on + strand, within CA265_RS00460 at 99.970 kb on - strand, within CA265_RS00460 at 99.980 kb on - strand, within CA265_RS00460 at 100.010 kb on - strand, within CA265_RS00460 at 100.032 kb on + strand, within CA265_RS00460 at 100.097 kb on + strand, within CA265_RS00460 at 100.170 kb on + strand, within CA265_RS00460 at 100.171 kb on - strand, within CA265_RS00460 at 100.171 kb on - strand, within CA265_RS00460 at 100.319 kb on + strand, within CA265_RS00460 at 100.320 kb on - strand, within CA265_RS00460 at 100.320 kb on - strand, within CA265_RS00460 at 100.324 kb on + strand, within CA265_RS00460 at 100.324 kb on + strand, within CA265_RS00460 at 100.324 kb on + strand, within CA265_RS00460 at 100.409 kb on + strand at 100.424 kb on + strand at 100.425 kb on - strand at 100.473 kb on + strand at 100.474 kb on - strand at 100.476 kb on - strand at 100.495 kb on - strand at 100.499 kb on - strand at 100.656 kb on - strand, within CA265_RS00465 at 100.680 kb on + strand, within CA265_RS00465 at 100.754 kb on + strand, within CA265_RS00465 at 100.755 kb on - strand, within CA265_RS00465 at 100.759 kb on + strand, within CA265_RS00465 at 100.789 kb on - strand, within CA265_RS00465 at 100.811 kb on + strand, within CA265_RS00465 at 100.987 kb on - strand at 101.018 kb on - strand at 101.045 kb on + strand at 101.055 kb on - strand at 101.057 kb on + strand at 101.058 kb on - strand at 101.122 kb on + strand, within CA265_RS00470 at 101.126 kb on + strand, within CA265_RS00470 at 101.126 kb on + strand, within CA265_RS00470 at 101.126 kb on + strand, within CA265_RS00470 at 101.126 kb on + strand, within CA265_RS00470 at 101.127 kb on - strand, within CA265_RS00470 at 101.127 kb on - strand, within CA265_RS00470 at 101.127 kb on - strand, within CA265_RS00470 at 101.127 kb on - strand, within CA265_RS00470 at 101.127 kb on - strand, within CA265_RS00470 at 101.127 kb on - strand, within CA265_RS00470 at 101.128 kb on + strand, within CA265_RS00470 at 101.213 kb on + strand, within CA265_RS00470 at 101.232 kb on + strand, within CA265_RS00470 at 101.232 kb on + strand, within CA265_RS00470 at 101.240 kb on - strand, within CA265_RS00470 at 101.346 kb on - strand, within CA265_RS00470 at 101.355 kb on + strand, within CA265_RS00470 at 101.388 kb on - strand, within CA265_RS00470 at 101.390 kb on + strand, within CA265_RS00470 at 101.525 kb on + strand, within CA265_RS00470 at 101.525 kb on + strand, within CA265_RS00470 at 101.525 kb on + strand, within CA265_RS00470 at 101.630 kb on + strand at 101.667 kb on + strand at 101.667 kb on + strand at 101.686 kb on - strand at 101.759 kb on - strand at 101.759 kb on - strand at 101.801 kb on - strand at 101.818 kb on - strand at 101.822 kb on - strand at 101.822 kb on - strand at 101.880 kb on - strand at 101.880 kb on - strand at 101.900 kb on - strand at 101.946 kb on + strand, within CA265_RS00475
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusidic 0.001 mg/ml remove 99,488 - +1.1 99,488 - +0.1 99,517 + +0.8 99,517 + +0.0 99,527 + CA265_RS00460 0.10 -0.4 99,527 + CA265_RS00460 0.10 +0.6 99,584 + CA265_RS00460 0.16 -0.9 99,585 - CA265_RS00460 0.16 +0.9 99,585 - CA265_RS00460 0.16 +0.2 99,623 - CA265_RS00460 0.19 -0.1 99,713 + CA265_RS00460 0.28 +0.6 99,740 + CA265_RS00460 0.31 -0.9 99,741 - CA265_RS00460 0.31 +0.7 99,745 + CA265_RS00460 0.31 -0.3 99,801 + CA265_RS00460 0.36 +0.5 99,801 + CA265_RS00460 0.36 -0.1 99,851 - CA265_RS00460 0.41 -2.1 99,854 - CA265_RS00460 0.41 +1.2 99,861 - CA265_RS00460 0.42 -0.6 99,919 + CA265_RS00460 0.47 -0.2 99,970 - CA265_RS00460 0.52 -0.6 99,980 - CA265_RS00460 0.53 -1.0 100,010 - CA265_RS00460 0.56 +2.0 100,032 + CA265_RS00460 0.58 -0.1 100,097 + CA265_RS00460 0.64 -0.6 100,170 + CA265_RS00460 0.71 -0.8 100,171 - CA265_RS00460 0.71 -0.2 100,171 - CA265_RS00460 0.71 +0.4 100,319 + CA265_RS00460 0.85 -1.0 100,320 - CA265_RS00460 0.85 +0.6 100,320 - CA265_RS00460 0.85 -1.3 100,324 + CA265_RS00460 0.85 -0.5 100,324 + CA265_RS00460 0.85 +0.6 100,324 + CA265_RS00460 0.85 +0.7 100,409 + +0.7 100,424 + +0.1 100,425 - -2.9 100,473 + -1.2 100,474 - +0.5 100,476 - +1.9 100,495 - +0.0 100,499 - -0.7 100,656 - CA265_RS00465 0.37 +0.4 100,680 + CA265_RS00465 0.42 -0.7 100,754 + CA265_RS00465 0.57 -0.1 100,755 - CA265_RS00465 0.58 +1.0 100,759 + CA265_RS00465 0.58 +1.1 100,789 - CA265_RS00465 0.65 +0.9 100,811 + CA265_RS00465 0.69 -1.4 100,987 - +0.8 101,018 - +0.2 101,045 + +1.3 101,055 - +0.0 101,057 + +0.8 101,058 - +0.4 101,122 + CA265_RS00470 0.13 -0.3 101,126 + CA265_RS00470 0.13 +0.3 101,126 + CA265_RS00470 0.13 -1.3 101,126 + CA265_RS00470 0.13 -0.5 101,126 + CA265_RS00470 0.13 -0.5 101,127 - CA265_RS00470 0.13 -1.5 101,127 - CA265_RS00470 0.13 -0.7 101,127 - CA265_RS00470 0.13 -0.0 101,127 - CA265_RS00470 0.13 +0.0 101,127 - CA265_RS00470 0.13 -1.3 101,127 - CA265_RS00470 0.13 -0.2 101,128 + CA265_RS00470 0.14 +0.5 101,213 + CA265_RS00470 0.27 -1.1 101,232 + CA265_RS00470 0.30 +0.1 101,232 + CA265_RS00470 0.30 -0.3 101,240 - CA265_RS00470 0.31 +0.3 101,346 - CA265_RS00470 0.47 -0.6 101,355 + CA265_RS00470 0.49 +0.3 101,388 - CA265_RS00470 0.54 -1.2 101,390 + CA265_RS00470 0.54 -0.1 101,525 + CA265_RS00470 0.75 -0.4 101,525 + CA265_RS00470 0.75 +0.7 101,525 + CA265_RS00470 0.75 +0.3 101,630 + -0.1 101,667 + -1.7 101,667 + +0.1 101,686 - +0.0 101,759 - +0.2 101,759 - +0.1 101,801 - -2.2 101,818 - +0.4 101,822 - +1.2 101,822 - -0.5 101,880 - -0.5 101,880 - +1.3 101,900 - +1.5 101,946 + CA265_RS00475 0.10 +0.3
Or see this region's nucleotide sequence