Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_564

Experiment: Cisplatin 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_375 and Ac3H11_376 are separated by 301 nucleotidesAc3H11_376 and Ac3H11_564 are separated by 16 nucleotidesAc3H11_564 and Ac3H11_377 are separated by 63 nucleotides Ac3H11_375 - Tartrate dehydrogenase (EC 1.1.1.93) @ Tartrate decarboxylase (EC 4.1.1.73) @ D-malic enzyme (EC 1.1.1.83), at 50,604 to 51,698 _375 Ac3H11_376 - DNA-binding protein HU-beta, at 52,000 to 52,272 _376 Ac3H11_564 - tRNA-Val-TAC, at 52,289 to 52,361 _564 Ac3H11_377 - Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8), at 52,425 to 54,353 _377 Position (kb) 52 53Strain fitness (log2 ratio) -2 -1 0 1 2 3at 51.739 kb on + strandat 51.739 kb on + strandat 51.790 kb on + strandat 51.791 kb on - strandat 51.796 kb on + strandat 51.834 kb on + strandat 51.834 kb on + strandat 51.834 kb on + strandat 51.889 kb on - strandat 51.889 kb on - strandat 52.191 kb on + strand, within Ac3H11_376

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0025 mg/ml
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51,739 + +0.5
51,739 + +0.6
51,790 + +2.0
51,791 - -0.5
51,796 + -2.1
51,834 + +1.7
51,834 + +2.6
51,834 + +2.8
51,889 - -1.3
51,889 - -2.5
52,191 + Ac3H11_376 0.70 -2.2

Or see this region's nucleotide sequence