Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_5000

Experiment: Cisplatin 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4998 and Ac3H11_4999 are separated by 167 nucleotidesAc3H11_4999 and Ac3H11_5000 are separated by 143 nucleotidesAc3H11_5000 and Ac3H11_5001 are separated by 412 nucleotidesAc3H11_5001 and Ac3H11_5002 are separated by 13 nucleotides Ac3H11_4998 - 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54), at 167,810 to 168,910 _4998 Ac3H11_4999 - NLP/P60 protein, at 169,078 to 169,581 _4999 Ac3H11_5000 - 2-isopropylmalate synthase (EC 2.3.3.13), at 169,725 to 171,425 _5000 Ac3H11_5001 - PhnB protein, at 171,838 to 172,203 _5001 Ac3H11_5002 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 172,217 to 174,142 _5002 Position (kb) 169 170 171 172Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 169.079 kb on + strandat 169.079 kb on + strandat 169.079 kb on + strandat 169.080 kb on - strandat 169.190 kb on + strand, within Ac3H11_4999at 169.190 kb on + strand, within Ac3H11_4999at 169.190 kb on + strand, within Ac3H11_4999at 169.190 kb on + strand, within Ac3H11_4999at 169.190 kb on + strand, within Ac3H11_4999at 169.190 kb on + strand, within Ac3H11_4999at 169.190 kb on + strand, within Ac3H11_4999at 169.190 kb on + strand, within Ac3H11_4999at 169.190 kb on + strand, within Ac3H11_4999at 169.190 kb on + strand, within Ac3H11_4999at 169.191 kb on - strand, within Ac3H11_4999at 169.191 kb on - strand, within Ac3H11_4999at 169.191 kb on - strand, within Ac3H11_4999at 169.191 kb on - strand, within Ac3H11_4999at 169.191 kb on - strand, within Ac3H11_4999at 169.332 kb on - strand, within Ac3H11_4999at 169.337 kb on + strand, within Ac3H11_4999at 169.337 kb on + strand, within Ac3H11_4999at 169.394 kb on + strand, within Ac3H11_4999at 169.642 kb on + strandat 169.689 kb on + strandat 169.690 kb on - strandat 169.704 kb on - strandat 169.946 kb on - strand, within Ac3H11_5000at 170.125 kb on + strand, within Ac3H11_5000at 170.125 kb on + strand, within Ac3H11_5000at 170.125 kb on + strand, within Ac3H11_5000at 170.125 kb on + strand, within Ac3H11_5000at 170.125 kb on + strand, within Ac3H11_5000at 170.125 kb on + strand, within Ac3H11_5000at 170.126 kb on - strand, within Ac3H11_5000at 170.126 kb on - strand, within Ac3H11_5000at 170.126 kb on - strand, within Ac3H11_5000at 170.126 kb on - strand, within Ac3H11_5000at 170.126 kb on - strand, within Ac3H11_5000at 170.126 kb on - strand, within Ac3H11_5000at 170.126 kb on - strand, within Ac3H11_5000at 170.314 kb on + strand, within Ac3H11_5000at 170.314 kb on + strand, within Ac3H11_5000at 170.315 kb on - strand, within Ac3H11_5000at 170.315 kb on - strand, within Ac3H11_5000at 170.315 kb on - strand, within Ac3H11_5000at 170.315 kb on - strand, within Ac3H11_5000at 170.315 kb on - strand, within Ac3H11_5000at 170.350 kb on + strand, within Ac3H11_5000at 170.350 kb on + strand, within Ac3H11_5000at 170.350 kb on + strand, within Ac3H11_5000at 170.350 kb on + strand, within Ac3H11_5000at 170.351 kb on - strand, within Ac3H11_5000at 170.555 kb on - strand, within Ac3H11_5000at 170.555 kb on - strand, within Ac3H11_5000at 170.905 kb on + strand, within Ac3H11_5000at 170.905 kb on + strand, within Ac3H11_5000at 170.906 kb on - strand, within Ac3H11_5000at 170.906 kb on - strand, within Ac3H11_5000at 170.906 kb on - strand, within Ac3H11_5000at 170.936 kb on + strand, within Ac3H11_5000at 170.957 kb on - strand, within Ac3H11_5000at 171.043 kb on + strand, within Ac3H11_5000at 171.043 kb on + strand, within Ac3H11_5000at 171.043 kb on + strand, within Ac3H11_5000at 171.043 kb on + strand, within Ac3H11_5000at 171.044 kb on - strand, within Ac3H11_5000at 171.044 kb on - strand, within Ac3H11_5000at 171.044 kb on - strand, within Ac3H11_5000at 171.044 kb on - strand, within Ac3H11_5000at 171.400 kb on + strandat 171.400 kb on + strandat 171.400 kb on + strandat 171.400 kb on + strandat 171.400 kb on + strandat 171.400 kb on + strandat 171.401 kb on - strandat 171.401 kb on - strandat 171.622 kb on + strandat 171.622 kb on + strandat 171.622 kb on + strandat 171.622 kb on + strandat 171.622 kb on + strandat 171.623 kb on - strandat 171.623 kb on - strandat 171.634 kb on + strandat 171.664 kb on - strandat 171.677 kb on + strandat 171.678 kb on - strandat 171.844 kb on + strandat 171.844 kb on + strandat 171.845 kb on - strandat 171.845 kb on - strandat 171.845 kb on - strandat 171.845 kb on - strandat 171.913 kb on + strand, within Ac3H11_5001at 171.913 kb on + strand, within Ac3H11_5001at 171.913 kb on + strand, within Ac3H11_5001at 171.913 kb on + strand, within Ac3H11_5001at 171.914 kb on - strand, within Ac3H11_5001at 171.914 kb on - strand, within Ac3H11_5001at 171.914 kb on - strand, within Ac3H11_5001at 171.914 kb on - strand, within Ac3H11_5001at 171.914 kb on - strand, within Ac3H11_5001at 172.081 kb on + strand, within Ac3H11_5001at 172.081 kb on + strand, within Ac3H11_5001at 172.082 kb on - strand, within Ac3H11_5001at 172.082 kb on - strand, within Ac3H11_5001at 172.082 kb on - strand, within Ac3H11_5001at 172.082 kb on - strand, within Ac3H11_5001at 172.082 kb on - strand, within Ac3H11_5001at 172.082 kb on - strand, within Ac3H11_5001at 172.082 kb on - strand, within Ac3H11_5001at 172.183 kb on + strandat 172.183 kb on + strandat 172.183 kb on + strandat 172.184 kb on - strandat 172.219 kb on - strandat 172.281 kb on + strandat 172.281 kb on + strandat 172.281 kb on + strandat 172.282 kb on - strandat 172.282 kb on - strandat 172.282 kb on - strandat 172.296 kb on + strandat 172.317 kb on + strandat 172.317 kb on + strandat 172.317 kb on + strandat 172.318 kb on - strandat 172.318 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0025 mg/ml
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169,079 + +0.5
169,079 + -0.7
169,079 + -2.5
169,080 - -0.6
169,190 + Ac3H11_4999 0.22 +0.1
169,190 + Ac3H11_4999 0.22 +0.3
169,190 + Ac3H11_4999 0.22 +1.4
169,190 + Ac3H11_4999 0.22 +1.5
169,190 + Ac3H11_4999 0.22 -1.3
169,190 + Ac3H11_4999 0.22 -0.8
169,190 + Ac3H11_4999 0.22 -0.7
169,190 + Ac3H11_4999 0.22 +0.7
169,190 + Ac3H11_4999 0.22 -0.7
169,190 + Ac3H11_4999 0.22 -1.1
169,191 - Ac3H11_4999 0.22 +2.2
169,191 - Ac3H11_4999 0.22 -3.6
169,191 - Ac3H11_4999 0.22 +0.9
169,191 - Ac3H11_4999 0.22 -2.6
169,191 - Ac3H11_4999 0.22 +1.5
169,332 - Ac3H11_4999 0.50 -1.7
169,337 + Ac3H11_4999 0.51 +0.7
169,337 + Ac3H11_4999 0.51 +0.8
169,394 + Ac3H11_4999 0.63 +0.4
169,642 + -3.1
169,689 + +1.5
169,690 - -1.8
169,704 - +2.0
169,946 - Ac3H11_5000 0.13 -0.0
170,125 + Ac3H11_5000 0.24 -1.8
170,125 + Ac3H11_5000 0.24 +1.5
170,125 + Ac3H11_5000 0.24 -0.1
170,125 + Ac3H11_5000 0.24 +2.2
170,125 + Ac3H11_5000 0.24 -1.7
170,125 + Ac3H11_5000 0.24 -0.4
170,126 - Ac3H11_5000 0.24 -2.2
170,126 - Ac3H11_5000 0.24 +0.1
170,126 - Ac3H11_5000 0.24 -1.4
170,126 - Ac3H11_5000 0.24 -1.1
170,126 - Ac3H11_5000 0.24 +0.7
170,126 - Ac3H11_5000 0.24 +0.3
170,126 - Ac3H11_5000 0.24 +1.9
170,314 + Ac3H11_5000 0.35 +1.7
170,314 + Ac3H11_5000 0.35 +0.6
170,315 - Ac3H11_5000 0.35 -0.4
170,315 - Ac3H11_5000 0.35 -0.2
170,315 - Ac3H11_5000 0.35 -0.1
170,315 - Ac3H11_5000 0.35 +0.0
170,315 - Ac3H11_5000 0.35 +1.3
170,350 + Ac3H11_5000 0.37 -1.7
170,350 + Ac3H11_5000 0.37 -0.8
170,350 + Ac3H11_5000 0.37 -2.0
170,350 + Ac3H11_5000 0.37 -0.0
170,351 - Ac3H11_5000 0.37 +0.1
170,555 - Ac3H11_5000 0.49 +0.1
170,555 - Ac3H11_5000 0.49 +0.4
170,905 + Ac3H11_5000 0.69 +1.1
170,905 + Ac3H11_5000 0.69 +0.4
170,906 - Ac3H11_5000 0.69 +1.3
170,906 - Ac3H11_5000 0.69 -1.7
170,906 - Ac3H11_5000 0.69 +0.4
170,936 + Ac3H11_5000 0.71 +0.5
170,957 - Ac3H11_5000 0.72 +1.4
171,043 + Ac3H11_5000 0.77 -1.0
171,043 + Ac3H11_5000 0.77 -1.5
171,043 + Ac3H11_5000 0.77 -3.4
171,043 + Ac3H11_5000 0.77 -0.4
171,044 - Ac3H11_5000 0.78 -0.3
171,044 - Ac3H11_5000 0.78 +0.1
171,044 - Ac3H11_5000 0.78 -1.8
171,044 - Ac3H11_5000 0.78 -3.3
171,400 + +0.6
171,400 + +0.9
171,400 + +1.7
171,400 + +1.0
171,400 + +0.7
171,400 + -2.0
171,401 - +0.9
171,401 - +2.3
171,622 + -0.3
171,622 + +0.3
171,622 + +1.7
171,622 + -1.4
171,622 + +0.6
171,623 - -2.0
171,623 - +0.2
171,634 + -0.8
171,664 - +0.5
171,677 + -0.3
171,678 - +0.5
171,844 + +0.6
171,844 + +0.1
171,845 - -1.1
171,845 - -2.5
171,845 - +1.8
171,845 - +0.3
171,913 + Ac3H11_5001 0.20 +1.0
171,913 + Ac3H11_5001 0.20 -3.9
171,913 + Ac3H11_5001 0.20 -2.3
171,913 + Ac3H11_5001 0.20 -0.2
171,914 - Ac3H11_5001 0.21 -1.0
171,914 - Ac3H11_5001 0.21 -0.8
171,914 - Ac3H11_5001 0.21 -0.5
171,914 - Ac3H11_5001 0.21 -0.7
171,914 - Ac3H11_5001 0.21 -0.6
172,081 + Ac3H11_5001 0.66 +1.7
172,081 + Ac3H11_5001 0.66 +0.9
172,082 - Ac3H11_5001 0.67 +0.7
172,082 - Ac3H11_5001 0.67 +0.3
172,082 - Ac3H11_5001 0.67 +2.0
172,082 - Ac3H11_5001 0.67 -2.2
172,082 - Ac3H11_5001 0.67 +0.5
172,082 - Ac3H11_5001 0.67 -0.1
172,082 - Ac3H11_5001 0.67 +0.3
172,183 + -1.1
172,183 + -1.2
172,183 + +1.5
172,184 - +1.4
172,219 - +0.7
172,281 + -1.8
172,281 + -0.5
172,281 + -0.3
172,282 - -0.5
172,282 - +0.6
172,282 - +1.0
172,296 + +1.7
172,317 + +1.7
172,317 + -0.5
172,317 + -1.1
172,318 - +1.4
172,318 - -0.4

Or see this region's nucleotide sequence