Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_476

Experiment: Cisplatin 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_475 and Ac3H11_476 are separated by 222 nucleotidesAc3H11_476 and Ac3H11_477 are separated by 48 nucleotides Ac3H11_475 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 171,157 to 172,233 _475 Ac3H11_476 - hypothetical protein, at 172,456 to 172,608 _476 Ac3H11_477 - Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-), at 172,657 to 174,171 _477 Position (kb) 172 173Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 171.580 kb on + strand, within Ac3H11_475at 171.580 kb on + strand, within Ac3H11_475at 171.581 kb on - strand, within Ac3H11_475at 171.581 kb on - strand, within Ac3H11_475at 171.861 kb on - strand, within Ac3H11_475at 171.893 kb on - strand, within Ac3H11_475at 171.893 kb on - strand, within Ac3H11_475at 171.945 kb on + strand, within Ac3H11_475at 172.021 kb on + strand, within Ac3H11_475at 172.022 kb on - strand, within Ac3H11_475at 172.022 kb on - strand, within Ac3H11_475at 172.022 kb on - strand, within Ac3H11_475at 172.045 kb on + strand, within Ac3H11_475at 172.045 kb on + strand, within Ac3H11_475at 172.045 kb on + strand, within Ac3H11_475at 172.046 kb on - strand, within Ac3H11_475at 172.046 kb on - strand, within Ac3H11_475at 172.046 kb on - strand, within Ac3H11_475at 172.186 kb on + strandat 172.186 kb on + strandat 172.187 kb on - strandat 172.187 kb on - strandat 172.187 kb on - strandat 172.222 kb on + strandat 172.222 kb on + strandat 172.222 kb on + strandat 172.222 kb on + strandat 172.222 kb on + strandat 172.223 kb on - strandat 172.223 kb on - strandat 172.327 kb on + strandat 172.327 kb on + strandat 172.327 kb on + strandat 172.328 kb on - strandat 172.328 kb on - strandat 172.328 kb on - strandat 172.328 kb on - strandat 172.328 kb on - strandat 172.552 kb on + strand, within Ac3H11_476at 172.552 kb on + strand, within Ac3H11_476at 172.552 kb on + strand, within Ac3H11_476at 172.552 kb on + strand, within Ac3H11_476at 172.552 kb on + strand, within Ac3H11_476at 172.553 kb on - strand, within Ac3H11_476at 172.553 kb on - strand, within Ac3H11_476at 172.553 kb on - strand, within Ac3H11_476at 172.553 kb on - strand, within Ac3H11_476at 172.574 kb on + strand, within Ac3H11_476at 172.574 kb on + strand, within Ac3H11_476at 172.575 kb on - strand, within Ac3H11_476at 172.575 kb on - strand, within Ac3H11_476at 172.772 kb on + strandat 172.772 kb on + strandat 172.772 kb on + strandat 172.773 kb on - strandat 172.773 kb on - strandat 172.857 kb on - strand, within Ac3H11_477at 173.144 kb on + strand, within Ac3H11_477at 173.145 kb on - strand, within Ac3H11_477at 173.167 kb on + strand, within Ac3H11_477at 173.167 kb on + strand, within Ac3H11_477at 173.167 kb on + strand, within Ac3H11_477at 173.167 kb on + strand, within Ac3H11_477at 173.167 kb on + strand, within Ac3H11_477at 173.167 kb on + strand, within Ac3H11_477at 173.167 kb on + strand, within Ac3H11_477at 173.167 kb on + strand, within Ac3H11_477at 173.168 kb on - strand, within Ac3H11_477at 173.168 kb on - strand, within Ac3H11_477at 173.168 kb on - strand, within Ac3H11_477at 173.168 kb on - strand, within Ac3H11_477at 173.168 kb on - strand, within Ac3H11_477at 173.168 kb on - strand, within Ac3H11_477at 173.250 kb on - strand, within Ac3H11_477at 173.250 kb on - strand, within Ac3H11_477at 173.250 kb on - strand, within Ac3H11_477at 173.348 kb on + strand, within Ac3H11_477at 173.348 kb on + strand, within Ac3H11_477at 173.349 kb on - strand, within Ac3H11_477at 173.413 kb on + strand, within Ac3H11_477at 173.413 kb on + strand, within Ac3H11_477at 173.435 kb on + strand, within Ac3H11_477at 173.435 kb on + strand, within Ac3H11_477at 173.435 kb on + strand, within Ac3H11_477at 173.435 kb on + strand, within Ac3H11_477at 173.435 kb on + strand, within Ac3H11_477at 173.435 kb on + strand, within Ac3H11_477at 173.435 kb on + strand, within Ac3H11_477at 173.435 kb on + strand, within Ac3H11_477at 173.435 kb on + strand, within Ac3H11_477at 173.435 kb on + strand, within Ac3H11_477at 173.435 kb on + strand, within Ac3H11_477at 173.435 kb on + strand, within Ac3H11_477at 173.435 kb on + strand, within Ac3H11_477at 173.435 kb on + strand, within Ac3H11_477at 173.435 kb on + strand, within Ac3H11_477at 173.435 kb on + strand, within Ac3H11_477at 173.435 kb on + strandat 173.435 kb on + strand, within Ac3H11_477at 173.435 kb on + strand, within Ac3H11_477at 173.435 kb on + strand, within Ac3H11_477at 173.435 kb on + strand, within Ac3H11_477at 173.435 kb on + strand, within Ac3H11_477at 173.435 kb on + strand, within Ac3H11_477at 173.435 kb on + strand, within Ac3H11_477at 173.436 kb on - strand, within Ac3H11_477at 173.436 kb on - strand, within Ac3H11_477at 173.436 kb on - strand, within Ac3H11_477at 173.436 kb on - strand, within Ac3H11_477at 173.436 kb on - strand, within Ac3H11_477at 173.436 kb on - strand, within Ac3H11_477at 173.436 kb on - strand, within Ac3H11_477at 173.436 kb on - strand, within Ac3H11_477at 173.436 kb on - strand, within Ac3H11_477at 173.436 kb on - strand, within Ac3H11_477at 173.436 kb on - strand, within Ac3H11_477at 173.436 kb on - strand, within Ac3H11_477at 173.436 kb on - strand, within Ac3H11_477at 173.436 kb on - strand, within Ac3H11_477at 173.436 kb on - strand, within Ac3H11_477at 173.436 kb on - strand, within Ac3H11_477at 173.436 kb on - strand, within Ac3H11_477at 173.436 kb on - strand, within Ac3H11_477at 173.471 kb on + strand, within Ac3H11_477at 173.472 kb on - strand, within Ac3H11_477at 173.541 kb on - strand, within Ac3H11_477at 173.541 kb on - strand, within Ac3H11_477at 173.541 kb on - strand, within Ac3H11_477at 173.541 kb on - strand, within Ac3H11_477at 173.594 kb on + strand, within Ac3H11_477

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0025 mg/ml
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171,580 + Ac3H11_475 0.39 -0.3
171,580 + Ac3H11_475 0.39 +1.4
171,581 - Ac3H11_475 0.39 +0.3
171,581 - Ac3H11_475 0.39 +1.3
171,861 - Ac3H11_475 0.65 +1.5
171,893 - Ac3H11_475 0.68 +0.4
171,893 - Ac3H11_475 0.68 -1.1
171,945 + Ac3H11_475 0.73 +1.6
172,021 + Ac3H11_475 0.80 +1.3
172,022 - Ac3H11_475 0.80 +0.2
172,022 - Ac3H11_475 0.80 -1.3
172,022 - Ac3H11_475 0.80 +1.7
172,045 + Ac3H11_475 0.82 -2.7
172,045 + Ac3H11_475 0.82 -2.9
172,045 + Ac3H11_475 0.82 -2.2
172,046 - Ac3H11_475 0.83 -1.8
172,046 - Ac3H11_475 0.83 -0.9
172,046 - Ac3H11_475 0.83 +0.8
172,186 + +0.6
172,186 + -2.7
172,187 - +2.5
172,187 - +1.5
172,187 - +0.8
172,222 + -0.2
172,222 + -2.4
172,222 + +0.4
172,222 + -4.0
172,222 + +0.4
172,223 - +1.3
172,223 - -1.2
172,327 + +0.4
172,327 + -0.3
172,327 + -0.3
172,328 - +0.1
172,328 - -0.5
172,328 - -2.4
172,328 - +0.3
172,328 - -0.7
172,552 + Ac3H11_476 0.63 -0.8
172,552 + Ac3H11_476 0.63 +1.7
172,552 + Ac3H11_476 0.63 +1.5
172,552 + Ac3H11_476 0.63 +1.7
172,552 + Ac3H11_476 0.63 -0.6
172,553 - Ac3H11_476 0.63 +1.1
172,553 - Ac3H11_476 0.63 -0.1
172,553 - Ac3H11_476 0.63 -2.1
172,553 - Ac3H11_476 0.63 +0.4
172,574 + Ac3H11_476 0.77 -0.5
172,574 + Ac3H11_476 0.77 -0.5
172,575 - Ac3H11_476 0.78 +1.3
172,575 - Ac3H11_476 0.78 -2.9
172,772 + -1.5
172,772 + +1.1
172,772 + +0.5
172,773 - -0.0
172,773 - -2.2
172,857 - Ac3H11_477 0.13 +1.3
173,144 + Ac3H11_477 0.32 -2.7
173,145 - Ac3H11_477 0.32 -0.3
173,167 + Ac3H11_477 0.34 -1.9
173,167 + Ac3H11_477 0.34 -0.9
173,167 + Ac3H11_477 0.34 -1.0
173,167 + Ac3H11_477 0.34 -2.1
173,167 + Ac3H11_477 0.34 -0.5
173,167 + Ac3H11_477 0.34 +0.5
173,167 + Ac3H11_477 0.34 +0.8
173,167 + Ac3H11_477 0.34 -3.3
173,168 - Ac3H11_477 0.34 -0.5
173,168 - Ac3H11_477 0.34 -0.6
173,168 - Ac3H11_477 0.34 +1.1
173,168 - Ac3H11_477 0.34 +2.3
173,168 - Ac3H11_477 0.34 -0.7
173,168 - Ac3H11_477 0.34 -0.1
173,250 - Ac3H11_477 0.39 +0.3
173,250 - Ac3H11_477 0.39 +0.4
173,250 - Ac3H11_477 0.39 +0.6
173,348 + Ac3H11_477 0.46 -0.2
173,348 + Ac3H11_477 0.46 -0.5
173,349 - Ac3H11_477 0.46 -2.5
173,413 + Ac3H11_477 0.50 -2.0
173,413 + Ac3H11_477 0.50 +3.1
173,435 + Ac3H11_477 0.51 -2.8
173,435 + Ac3H11_477 0.51 +0.8
173,435 + Ac3H11_477 0.51 +1.1
173,435 + Ac3H11_477 0.51 -0.7
173,435 + Ac3H11_477 0.51 +0.5
173,435 + Ac3H11_477 0.51 -0.5
173,435 + Ac3H11_477 0.51 -0.7
173,435 + Ac3H11_477 0.51 -3.1
173,435 + Ac3H11_477 0.51 -0.3
173,435 + Ac3H11_477 0.51 -0.7
173,435 + Ac3H11_477 0.51 -0.7
173,435 + Ac3H11_477 0.51 +1.2
173,435 + Ac3H11_477 0.51 -2.9
173,435 + Ac3H11_477 0.51 -1.8
173,435 + Ac3H11_477 0.51 +0.3
173,435 + Ac3H11_477 0.51 +0.9
173,435 + -0.5
173,435 + Ac3H11_477 0.51 -1.2
173,435 + Ac3H11_477 0.51 +0.7
173,435 + Ac3H11_477 0.51 -0.8
173,435 + Ac3H11_477 0.51 -2.5
173,435 + Ac3H11_477 0.51 +1.5
173,435 + Ac3H11_477 0.51 -0.3
173,435 + Ac3H11_477 0.51 +2.0
173,436 - Ac3H11_477 0.51 -0.9
173,436 - Ac3H11_477 0.51 +0.6
173,436 - Ac3H11_477 0.51 +0.4
173,436 - Ac3H11_477 0.51 -0.0
173,436 - Ac3H11_477 0.51 +0.6
173,436 - Ac3H11_477 0.51 -1.9
173,436 - Ac3H11_477 0.51 -0.9
173,436 - Ac3H11_477 0.51 +0.6
173,436 - Ac3H11_477 0.51 -1.4
173,436 - Ac3H11_477 0.51 +1.5
173,436 - Ac3H11_477 0.51 -1.1
173,436 - Ac3H11_477 0.51 -0.7
173,436 - Ac3H11_477 0.51 -2.5
173,436 - Ac3H11_477 0.51 +0.8
173,436 - Ac3H11_477 0.51 -0.5
173,436 - Ac3H11_477 0.51 -4.2
173,436 - Ac3H11_477 0.51 -1.1
173,436 - Ac3H11_477 0.51 -1.5
173,471 + Ac3H11_477 0.54 -2.1
173,472 - Ac3H11_477 0.54 +2.3
173,541 - Ac3H11_477 0.58 +1.0
173,541 - Ac3H11_477 0.58 -0.9
173,541 - Ac3H11_477 0.58 +0.3
173,541 - Ac3H11_477 0.58 -3.0
173,594 + Ac3H11_477 0.62 -2.8

Or see this region's nucleotide sequence