Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4746

Experiment: Cisplatin 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4743 and Ac3H11_4744 are separated by 6 nucleotidesAc3H11_4744 and Ac3H11_4745 are separated by 4 nucleotidesAc3H11_4745 and Ac3H11_4746 overlap by 26 nucleotidesAc3H11_4746 and Ac3H11_4747 overlap by 6 nucleotides Ac3H11_4743 - Outer membrane stress sensor protease DegS, at 47,263 to 48,423 _4743 Ac3H11_4744 - hypothetical protein, at 48,430 to 48,552 _4744 Ac3H11_4745 - FIG137478: Hypothetical protein YbgI, at 48,557 to 49,324 _4745 Ac3H11_4746 - hypothetical protein, at 49,299 to 49,454 _4746 Ac3H11_4747 - 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262), at 49,449 to 50,477 _4747 Position (kb) 49 50Strain fitness (log2 ratio) -2 -1 0 1 2at 48.438 kb on - strandat 48.438 kb on - strandat 48.438 kb on - strandat 48.438 kb on - strandat 48.438 kb on - strandat 48.438 kb on - strandat 48.438 kb on - strandat 48.438 kb on - strandat 48.848 kb on + strand, within Ac3H11_4745at 49.112 kb on + strand, within Ac3H11_4745at 49.113 kb on - strand, within Ac3H11_4745at 49.113 kb on - strand, within Ac3H11_4745at 49.113 kb on - strand, within Ac3H11_4745at 49.343 kb on + strand, within Ac3H11_4746at 49.343 kb on + strand, within Ac3H11_4746at 49.344 kb on - strand, within Ac3H11_4746at 49.344 kb on - strand, within Ac3H11_4746at 49.361 kb on + strand, within Ac3H11_4746at 49.362 kb on - strand, within Ac3H11_4746

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0025 mg/ml
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48,438 - -0.6
48,438 - +1.2
48,438 - -0.3
48,438 - +0.8
48,438 - -0.7
48,438 - +0.6
48,438 - +0.6
48,438 - -2.7
48,848 + Ac3H11_4745 0.38 -2.0
49,112 + Ac3H11_4745 0.72 -2.3
49,113 - Ac3H11_4745 0.72 +0.2
49,113 - Ac3H11_4745 0.72 -2.1
49,113 - Ac3H11_4745 0.72 +1.1
49,343 + Ac3H11_4746 0.28 -1.8
49,343 + Ac3H11_4746 0.28 -0.9
49,344 - Ac3H11_4746 0.29 -0.3
49,344 - Ac3H11_4746 0.29 -1.6
49,361 + Ac3H11_4746 0.40 +2.3
49,362 - Ac3H11_4746 0.40 +0.6

Or see this region's nucleotide sequence