Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3957

Experiment: Cisplatin 0.0025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_3955 and Ac3H11_3956 are separated by 2 nucleotidesAc3H11_3956 and Ac3H11_3957 are separated by 88 nucleotidesAc3H11_3957 and Ac3H11_3958 are separated by 64 nucleotides Ac3H11_3955 - TRAP-type C4-dicarboxylate transport system, large permease component, at 179,746 to 181,029 _3955 Ac3H11_3956 - TRAP-type C4-dicarboxylate transport system, small permease component, at 181,032 to 181,550 _3956 Ac3H11_3957 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 181,639 to 182,628 _3957 Ac3H11_3958 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 182,693 to 183,592 _3958 Position (kb) 181 182 183Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 180.966 kb on - strandat 181.016 kb on - strandat 181.023 kb on + strandat 181.023 kb on + strandat 181.024 kb on - strandat 181.150 kb on + strand, within Ac3H11_3956at 181.150 kb on + strand, within Ac3H11_3956at 181.150 kb on + strand, within Ac3H11_3956at 181.150 kb on + strand, within Ac3H11_3956at 181.151 kb on - strand, within Ac3H11_3956at 181.151 kb on - strand, within Ac3H11_3956at 181.151 kb on - strand, within Ac3H11_3956at 181.151 kb on - strand, within Ac3H11_3956at 181.514 kb on - strandat 181.550 kb on + strandat 181.550 kb on + strandat 181.551 kb on - strandat 181.551 kb on - strandat 181.640 kb on + strandat 181.640 kb on + strandat 181.640 kb on + strandat 181.640 kb on + strandat 181.640 kb on + strandat 181.640 kb on + strandat 181.641 kb on - strandat 181.641 kb on - strandat 181.676 kb on + strandat 181.676 kb on + strandat 181.676 kb on + strandat 181.677 kb on - strandat 181.718 kb on + strandat 181.718 kb on + strandat 181.719 kb on - strandat 181.778 kb on + strand, within Ac3H11_3957at 181.778 kb on + strand, within Ac3H11_3957at 181.778 kb on + strand, within Ac3H11_3957at 181.934 kb on + strand, within Ac3H11_3957at 181.934 kb on + strand, within Ac3H11_3957at 182.159 kb on + strand, within Ac3H11_3957at 182.160 kb on - strand, within Ac3H11_3957at 182.160 kb on - strand, within Ac3H11_3957at 182.271 kb on + strand, within Ac3H11_3957at 182.271 kb on + strand, within Ac3H11_3957at 182.271 kb on + strand, within Ac3H11_3957at 182.271 kb on + strand, within Ac3H11_3957at 182.271 kb on + strand, within Ac3H11_3957at 182.271 kb on + strand, within Ac3H11_3957at 182.272 kb on - strand, within Ac3H11_3957at 182.272 kb on - strand, within Ac3H11_3957at 182.272 kb on - strand, within Ac3H11_3957at 182.272 kb on - strand, within Ac3H11_3957at 182.734 kb on - strandat 182.734 kb on - strandat 182.734 kb on - strandat 182.734 kb on - strandat 182.880 kb on + strand, within Ac3H11_3958at 182.881 kb on - strand, within Ac3H11_3958at 182.881 kb on - strand, within Ac3H11_3958at 182.881 kb on - strand, within Ac3H11_3958at 182.881 kb on - strand, within Ac3H11_3958at 182.881 kb on - strand, within Ac3H11_3958at 182.946 kb on + strand, within Ac3H11_3958at 182.946 kb on + strand, within Ac3H11_3958at 182.946 kb on + strand, within Ac3H11_3958at 182.947 kb on - strand, within Ac3H11_3958at 182.947 kb on - strand, within Ac3H11_3958at 182.947 kb on - strand, within Ac3H11_3958at 182.960 kb on - strand, within Ac3H11_3958at 183.042 kb on + strand, within Ac3H11_3958at 183.084 kb on + strand, within Ac3H11_3958at 183.207 kb on + strand, within Ac3H11_3958at 183.207 kb on + strand, within Ac3H11_3958at 183.207 kb on + strand, within Ac3H11_3958at 183.207 kb on + strand, within Ac3H11_3958at 183.216 kb on + strand, within Ac3H11_3958at 183.217 kb on - strand, within Ac3H11_3958at 183.414 kb on + strand, within Ac3H11_3958at 183.415 kb on - strand, within Ac3H11_3958at 183.539 kb on + strandat 183.539 kb on + strandat 183.595 kb on + strandat 183.595 kb on + strandat 183.595 kb on + strandat 183.596 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0025 mg/ml
remove
180,966 - +1.5
181,016 - -2.0
181,023 + +0.7
181,023 + +1.3
181,024 - +0.0
181,150 + Ac3H11_3956 0.23 -1.7
181,150 + Ac3H11_3956 0.23 +0.3
181,150 + Ac3H11_3956 0.23 -0.3
181,150 + Ac3H11_3956 0.23 -1.1
181,151 - Ac3H11_3956 0.23 +0.9
181,151 - Ac3H11_3956 0.23 -2.0
181,151 - Ac3H11_3956 0.23 -1.3
181,151 - Ac3H11_3956 0.23 +0.2
181,514 - -3.2
181,550 + +1.5
181,550 + -0.8
181,551 - -4.1
181,551 - -0.3
181,640 + +1.0
181,640 + +1.0
181,640 + +0.0
181,640 + +0.9
181,640 + +1.5
181,640 + -1.6
181,641 - -1.2
181,641 - +0.3
181,676 + -1.2
181,676 + -0.9
181,676 + +1.2
181,677 - -0.1
181,718 + +0.3
181,718 + -0.9
181,719 - +0.0
181,778 + Ac3H11_3957 0.14 -1.5
181,778 + Ac3H11_3957 0.14 +0.0
181,778 + Ac3H11_3957 0.14 -1.3
181,934 + Ac3H11_3957 0.30 +0.7
181,934 + Ac3H11_3957 0.30 +0.8
182,159 + Ac3H11_3957 0.53 -1.8
182,160 - Ac3H11_3957 0.53 +0.6
182,160 - Ac3H11_3957 0.53 +0.7
182,271 + Ac3H11_3957 0.64 +0.9
182,271 + Ac3H11_3957 0.64 -1.1
182,271 + Ac3H11_3957 0.64 -2.8
182,271 + Ac3H11_3957 0.64 +1.1
182,271 + Ac3H11_3957 0.64 +1.8
182,271 + Ac3H11_3957 0.64 -1.5
182,272 - Ac3H11_3957 0.64 -1.4
182,272 - Ac3H11_3957 0.64 -0.4
182,272 - Ac3H11_3957 0.64 +0.4
182,272 - Ac3H11_3957 0.64 -1.1
182,734 - +0.9
182,734 - -3.8
182,734 - -1.3
182,734 - +0.6
182,880 + Ac3H11_3958 0.21 -3.3
182,881 - Ac3H11_3958 0.21 +1.5
182,881 - Ac3H11_3958 0.21 -2.0
182,881 - Ac3H11_3958 0.21 -0.6
182,881 - Ac3H11_3958 0.21 +1.3
182,881 - Ac3H11_3958 0.21 -0.9
182,946 + Ac3H11_3958 0.28 -0.7
182,946 + Ac3H11_3958 0.28 +0.8
182,946 + Ac3H11_3958 0.28 +0.0
182,947 - Ac3H11_3958 0.28 +1.9
182,947 - Ac3H11_3958 0.28 +1.3
182,947 - Ac3H11_3958 0.28 +2.3
182,960 - Ac3H11_3958 0.30 -4.4
183,042 + Ac3H11_3958 0.39 +0.0
183,084 + Ac3H11_3958 0.43 -2.8
183,207 + Ac3H11_3958 0.57 -2.0
183,207 + Ac3H11_3958 0.57 -0.7
183,207 + Ac3H11_3958 0.57 +1.3
183,207 + Ac3H11_3958 0.57 +1.0
183,216 + Ac3H11_3958 0.58 -0.3
183,217 - Ac3H11_3958 0.58 +0.5
183,414 + Ac3H11_3958 0.80 +0.2
183,415 - Ac3H11_3958 0.80 -3.0
183,539 + -3.7
183,539 + -2.0
183,595 + -0.6
183,595 + -1.5
183,595 + -0.2
183,596 - +1.1

Or see this region's nucleotide sequence