Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3726

Experiment: Cisplatin 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3725 and Ac3H11_3726 are separated by 193 nucleotidesAc3H11_3726 and Ac3H11_3727 are separated by 86 nucleotidesAc3H11_3727 and Ac3H11_3728 are separated by 29 nucleotides Ac3H11_3725 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 85,327 to 86,169 _3725 Ac3H11_3726 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 86,363 to 87,361 _3726 Ac3H11_3727 - Creatinine amidohydrolase (EC 3.5.2.10), at 87,448 to 88,311 _3727 Ac3H11_3728 - Bona fide RidA/YjgF/TdcF/RutC subgroup, at 88,341 to 88,805 _3728 Position (kb) 86 87 88Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 86.072 kb on + strand, within Ac3H11_3725at 86.403 kb on + strandat 86.404 kb on - strandat 86.463 kb on + strand, within Ac3H11_3726at 86.463 kb on + strand, within Ac3H11_3726at 86.464 kb on - strand, within Ac3H11_3726at 86.563 kb on - strand, within Ac3H11_3726at 86.637 kb on + strand, within Ac3H11_3726at 86.637 kb on + strand, within Ac3H11_3726at 86.637 kb on + strand, within Ac3H11_3726at 86.637 kb on + strand, within Ac3H11_3726at 86.637 kb on + strand, within Ac3H11_3726at 86.637 kb on + strand, within Ac3H11_3726at 86.901 kb on + strand, within Ac3H11_3726at 86.902 kb on - strand, within Ac3H11_3726at 87.203 kb on - strand, within Ac3H11_3726at 87.217 kb on - strand, within Ac3H11_3726at 87.243 kb on + strand, within Ac3H11_3726at 87.258 kb on + strand, within Ac3H11_3726at 87.258 kb on + strand, within Ac3H11_3726at 87.258 kb on + strand, within Ac3H11_3726at 87.259 kb on - strand, within Ac3H11_3726at 87.259 kb on - strand, within Ac3H11_3726at 87.259 kb on - strand, within Ac3H11_3726at 87.259 kb on - strand, within Ac3H11_3726at 87.367 kb on + strandat 87.367 kb on + strandat 87.367 kb on + strandat 87.367 kb on + strandat 87.716 kb on + strand, within Ac3H11_3727at 87.717 kb on - strand, within Ac3H11_3727at 87.981 kb on - strand, within Ac3H11_3727at 88.076 kb on + strand, within Ac3H11_3727at 88.076 kb on + strand, within Ac3H11_3727at 88.077 kb on - strand, within Ac3H11_3727at 88.077 kb on - strand, within Ac3H11_3727at 88.298 kb on + strandat 88.298 kb on + strandat 88.298 kb on + strandat 88.299 kb on - strandat 88.299 kb on - strandat 88.357 kb on + strandat 88.357 kb on + strandat 88.357 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0025 mg/ml
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86,072 + Ac3H11_3725 0.88 -0.0
86,403 + -1.7
86,404 - +0.8
86,463 + Ac3H11_3726 0.10 -0.4
86,463 + Ac3H11_3726 0.10 +0.2
86,464 - Ac3H11_3726 0.10 -3.2
86,563 - Ac3H11_3726 0.20 +1.4
86,637 + Ac3H11_3726 0.27 +0.2
86,637 + Ac3H11_3726 0.27 +0.7
86,637 + Ac3H11_3726 0.27 -0.3
86,637 + Ac3H11_3726 0.27 +1.3
86,637 + Ac3H11_3726 0.27 +0.6
86,637 + Ac3H11_3726 0.27 -0.1
86,901 + Ac3H11_3726 0.54 -1.3
86,902 - Ac3H11_3726 0.54 +0.8
87,203 - Ac3H11_3726 0.84 -0.4
87,217 - Ac3H11_3726 0.85 +1.2
87,243 + Ac3H11_3726 0.88 +1.0
87,258 + Ac3H11_3726 0.90 -0.6
87,258 + Ac3H11_3726 0.90 +2.1
87,258 + Ac3H11_3726 0.90 -0.1
87,259 - Ac3H11_3726 0.90 +0.7
87,259 - Ac3H11_3726 0.90 -2.5
87,259 - Ac3H11_3726 0.90 -2.0
87,259 - Ac3H11_3726 0.90 -0.7
87,367 + -2.8
87,367 + +2.6
87,367 + -0.4
87,367 + -0.9
87,716 + Ac3H11_3727 0.31 +1.5
87,717 - Ac3H11_3727 0.31 +0.5
87,981 - Ac3H11_3727 0.62 -0.3
88,076 + Ac3H11_3727 0.73 +1.1
88,076 + Ac3H11_3727 0.73 -1.5
88,077 - Ac3H11_3727 0.73 -1.9
88,077 - Ac3H11_3727 0.73 -1.5
88,298 + +1.7
88,298 + +0.8
88,298 + +1.6
88,299 - -0.2
88,299 - +0.3
88,357 + +0.4
88,357 + +1.1
88,357 + +0.3

Or see this region's nucleotide sequence