Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3637

Experiment: Cisplatin 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3636 and Ac3H11_3637 overlap by 4 nucleotidesAc3H11_3637 and Ac3H11_3638 are separated by 163 nucleotides Ac3H11_3636 - hypothetical protein, at 194,383 to 195,855 _3636 Ac3H11_3637 - C-1'-hydroxylase CruF, at 195,852 to 196,673 _3637 Ac3H11_3638 - Biotin synthesis protein BioH, at 196,837 to 197,658 _3638 Position (kb) 195 196 197Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 195.008 kb on + strand, within Ac3H11_3636at 195.008 kb on + strand, within Ac3H11_3636at 195.008 kb on + strand, within Ac3H11_3636at 195.009 kb on - strand, within Ac3H11_3636at 195.009 kb on - strand, within Ac3H11_3636at 195.009 kb on - strand, within Ac3H11_3636at 195.009 kb on - strand, within Ac3H11_3636at 195.009 kb on - strand, within Ac3H11_3636at 195.009 kb on - strand, within Ac3H11_3636at 195.009 kb on - strand, within Ac3H11_3636at 195.081 kb on + strand, within Ac3H11_3636at 195.082 kb on - strand, within Ac3H11_3636at 195.093 kb on - strand, within Ac3H11_3636at 195.093 kb on - strand, within Ac3H11_3636at 195.152 kb on + strand, within Ac3H11_3636at 195.152 kb on + strand, within Ac3H11_3636at 195.153 kb on - strand, within Ac3H11_3636at 195.458 kb on + strand, within Ac3H11_3636at 195.458 kb on + strand, within Ac3H11_3636at 195.458 kb on + strand, within Ac3H11_3636at 195.458 kb on + strand, within Ac3H11_3636at 195.458 kb on + strand, within Ac3H11_3636at 195.458 kb on + strand, within Ac3H11_3636at 195.458 kb on + strand, within Ac3H11_3636at 195.459 kb on - strand, within Ac3H11_3636at 195.459 kb on - strand, within Ac3H11_3636at 195.459 kb on - strand, within Ac3H11_3636at 195.459 kb on - strand, within Ac3H11_3636at 195.459 kb on - strand, within Ac3H11_3636at 195.459 kb on - strand, within Ac3H11_3636at 195.459 kb on - strand, within Ac3H11_3636at 195.459 kb on - strand, within Ac3H11_3636at 195.587 kb on + strand, within Ac3H11_3636at 195.587 kb on + strand, within Ac3H11_3636at 195.587 kb on + strand, within Ac3H11_3636at 195.588 kb on - strand, within Ac3H11_3636at 195.588 kb on - strand, within Ac3H11_3636at 195.588 kb on - strand, within Ac3H11_3636at 195.588 kb on - strand, within Ac3H11_3636at 195.588 kb on - strand, within Ac3H11_3636at 195.855 kb on + strandat 195.889 kb on + strandat 195.994 kb on + strand, within Ac3H11_3637at 195.994 kb on + strand, within Ac3H11_3637at 195.994 kb on + strand, within Ac3H11_3637at 195.994 kb on + strand, within Ac3H11_3637at 195.995 kb on - strand, within Ac3H11_3637at 195.995 kb on - strand, within Ac3H11_3637at 195.995 kb on - strand, within Ac3H11_3637at 196.183 kb on + strand, within Ac3H11_3637at 196.183 kb on + strand, within Ac3H11_3637at 196.183 kb on + strand, within Ac3H11_3637at 196.184 kb on - strand, within Ac3H11_3637at 196.192 kb on + strand, within Ac3H11_3637at 196.192 kb on + strand, within Ac3H11_3637at 196.192 kb on + strand, within Ac3H11_3637at 196.192 kb on + strand, within Ac3H11_3637at 196.193 kb on - strand, within Ac3H11_3637at 196.193 kb on - strand, within Ac3H11_3637at 196.318 kb on + strand, within Ac3H11_3637at 196.318 kb on + strand, within Ac3H11_3637at 196.319 kb on - strand, within Ac3H11_3637at 196.327 kb on + strand, within Ac3H11_3637at 196.327 kb on + strand, within Ac3H11_3637at 196.327 kb on + strand, within Ac3H11_3637at 196.327 kb on + strand, within Ac3H11_3637at 196.328 kb on - strand, within Ac3H11_3637at 196.328 kb on - strand, within Ac3H11_3637at 196.328 kb on - strand, within Ac3H11_3637at 196.328 kb on - strand, within Ac3H11_3637at 196.328 kb on - strand, within Ac3H11_3637at 196.399 kb on + strand, within Ac3H11_3637at 196.399 kb on + strand, within Ac3H11_3637at 196.400 kb on - strand, within Ac3H11_3637at 196.400 kb on - strand, within Ac3H11_3637at 196.400 kb on - strand, within Ac3H11_3637at 196.400 kb on - strand, within Ac3H11_3637at 196.400 kb on - strand, within Ac3H11_3637at 196.405 kb on + strand, within Ac3H11_3637at 196.405 kb on + strand, within Ac3H11_3637at 196.405 kb on + strand, within Ac3H11_3637at 196.405 kb on + strand, within Ac3H11_3637at 196.405 kb on + strand, within Ac3H11_3637at 196.406 kb on - strand, within Ac3H11_3637at 196.406 kb on - strand, within Ac3H11_3637at 196.406 kb on - strand, within Ac3H11_3637at 196.406 kb on - strand, within Ac3H11_3637at 196.406 kb on - strand, within Ac3H11_3637at 196.610 kb on - strandat 196.610 kb on - strandat 196.610 kb on - strandat 196.627 kb on + strandat 196.627 kb on + strandat 196.628 kb on - strandat 196.628 kb on - strandat 196.628 kb on - strandat 196.693 kb on - strandat 196.709 kb on + strandat 196.710 kb on - strandat 196.710 kb on - strandat 196.710 kb on - strandat 196.805 kb on - strandat 196.805 kb on - strandat 196.806 kb on + strandat 196.806 kb on + strandat 196.806 kb on + strandat 196.806 kb on + strandat 196.806 kb on + strandat 196.807 kb on - strandat 196.807 kb on - strandat 196.807 kb on - strandat 196.807 kb on - strandat 196.807 kb on - strandat 196.807 kb on - strandat 197.090 kb on + strand, within Ac3H11_3638at 197.090 kb on + strand, within Ac3H11_3638at 197.090 kb on + strand, within Ac3H11_3638at 197.090 kb on + strand, within Ac3H11_3638at 197.090 kb on + strand, within Ac3H11_3638at 197.091 kb on - strand, within Ac3H11_3638at 197.091 kb on - strand, within Ac3H11_3638at 197.091 kb on - strand, within Ac3H11_3638at 197.091 kb on - strand, within Ac3H11_3638at 197.091 kb on - strand, within Ac3H11_3638at 197.165 kb on + strand, within Ac3H11_3638at 197.165 kb on + strand, within Ac3H11_3638at 197.165 kb on + strand, within Ac3H11_3638at 197.165 kb on + strand, within Ac3H11_3638at 197.165 kb on + strand, within Ac3H11_3638at 197.165 kb on + strand, within Ac3H11_3638at 197.166 kb on - strand, within Ac3H11_3638at 197.166 kb on - strand, within Ac3H11_3638at 197.166 kb on - strand, within Ac3H11_3638at 197.609 kb on + strandat 197.609 kb on + strandat 197.609 kb on + strandat 197.610 kb on - strandat 197.610 kb on - strandat 197.614 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0025 mg/ml
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195,008 + Ac3H11_3636 0.42 +0.8
195,008 + Ac3H11_3636 0.42 +1.3
195,008 + Ac3H11_3636 0.42 +1.4
195,009 - Ac3H11_3636 0.42 -0.4
195,009 - Ac3H11_3636 0.42 -1.5
195,009 - Ac3H11_3636 0.42 -2.0
195,009 - Ac3H11_3636 0.42 -1.4
195,009 - Ac3H11_3636 0.42 -1.5
195,009 - Ac3H11_3636 0.42 +0.1
195,009 - Ac3H11_3636 0.42 -1.1
195,081 + Ac3H11_3636 0.47 -2.6
195,082 - Ac3H11_3636 0.47 +1.0
195,093 - Ac3H11_3636 0.48 -0.1
195,093 - Ac3H11_3636 0.48 -1.6
195,152 + Ac3H11_3636 0.52 +1.0
195,152 + Ac3H11_3636 0.52 +1.2
195,153 - Ac3H11_3636 0.52 -1.5
195,458 + Ac3H11_3636 0.73 +1.3
195,458 + Ac3H11_3636 0.73 +0.8
195,458 + Ac3H11_3636 0.73 -1.3
195,458 + Ac3H11_3636 0.73 +1.3
195,458 + Ac3H11_3636 0.73 -0.7
195,458 + Ac3H11_3636 0.73 -0.1
195,458 + Ac3H11_3636 0.73 +1.1
195,459 - Ac3H11_3636 0.73 +0.4
195,459 - Ac3H11_3636 0.73 -1.0
195,459 - Ac3H11_3636 0.73 -0.3
195,459 - Ac3H11_3636 0.73 -1.4
195,459 - Ac3H11_3636 0.73 +0.3
195,459 - Ac3H11_3636 0.73 -0.9
195,459 - Ac3H11_3636 0.73 +2.6
195,459 - Ac3H11_3636 0.73 +0.7
195,587 + Ac3H11_3636 0.82 +2.1
195,587 + Ac3H11_3636 0.82 -0.4
195,587 + Ac3H11_3636 0.82 -0.5
195,588 - Ac3H11_3636 0.82 +0.6
195,588 - Ac3H11_3636 0.82 +1.8
195,588 - Ac3H11_3636 0.82 -0.5
195,588 - Ac3H11_3636 0.82 -0.7
195,588 - Ac3H11_3636 0.82 -1.8
195,855 + -1.3
195,889 + -0.7
195,994 + Ac3H11_3637 0.17 -0.6
195,994 + Ac3H11_3637 0.17 +1.0
195,994 + Ac3H11_3637 0.17 -1.8
195,994 + Ac3H11_3637 0.17 -0.3
195,995 - Ac3H11_3637 0.17 +0.8
195,995 - Ac3H11_3637 0.17 +2.5
195,995 - Ac3H11_3637 0.17 +2.1
196,183 + Ac3H11_3637 0.40 -0.4
196,183 + Ac3H11_3637 0.40 -1.3
196,183 + Ac3H11_3637 0.40 -3.0
196,184 - Ac3H11_3637 0.40 -1.5
196,192 + Ac3H11_3637 0.41 +0.1
196,192 + Ac3H11_3637 0.41 +0.7
196,192 + Ac3H11_3637 0.41 -2.3
196,192 + Ac3H11_3637 0.41 -1.0
196,193 - Ac3H11_3637 0.41 +1.0
196,193 - Ac3H11_3637 0.41 +0.6
196,318 + Ac3H11_3637 0.57 -0.9
196,318 + Ac3H11_3637 0.57 +0.7
196,319 - Ac3H11_3637 0.57 -1.5
196,327 + Ac3H11_3637 0.58 +1.2
196,327 + Ac3H11_3637 0.58 -2.6
196,327 + Ac3H11_3637 0.58 +1.1
196,327 + Ac3H11_3637 0.58 +1.1
196,328 - Ac3H11_3637 0.58 +2.0
196,328 - Ac3H11_3637 0.58 +1.6
196,328 - Ac3H11_3637 0.58 +0.3
196,328 - Ac3H11_3637 0.58 -2.7
196,328 - Ac3H11_3637 0.58 +0.6
196,399 + Ac3H11_3637 0.67 +1.2
196,399 + Ac3H11_3637 0.67 -3.8
196,400 - Ac3H11_3637 0.67 -0.9
196,400 - Ac3H11_3637 0.67 -0.9
196,400 - Ac3H11_3637 0.67 -0.6
196,400 - Ac3H11_3637 0.67 -1.0
196,400 - Ac3H11_3637 0.67 +0.6
196,405 + Ac3H11_3637 0.67 +2.0
196,405 + Ac3H11_3637 0.67 +0.8
196,405 + Ac3H11_3637 0.67 -0.5
196,405 + Ac3H11_3637 0.67 -2.4
196,405 + Ac3H11_3637 0.67 +1.0
196,406 - Ac3H11_3637 0.67 -1.3
196,406 - Ac3H11_3637 0.67 -0.4
196,406 - Ac3H11_3637 0.67 -0.5
196,406 - Ac3H11_3637 0.67 -1.1
196,406 - Ac3H11_3637 0.67 +1.8
196,610 - -0.0
196,610 - +0.2
196,610 - -3.0
196,627 + -1.5
196,627 + +0.5
196,628 - -0.5
196,628 - -0.0
196,628 - -0.3
196,693 - -0.6
196,709 + +1.2
196,710 - +1.1
196,710 - -0.1
196,710 - +0.4
196,805 - -0.9
196,805 - +1.6
196,806 + +0.9
196,806 + +1.4
196,806 + -3.5
196,806 + -0.4
196,806 + +0.6
196,807 - +0.1
196,807 - -0.6
196,807 - -0.5
196,807 - -0.1
196,807 - -1.2
196,807 - -0.9
197,090 + Ac3H11_3638 0.31 -0.4
197,090 + Ac3H11_3638 0.31 -0.1
197,090 + Ac3H11_3638 0.31 +1.1
197,090 + Ac3H11_3638 0.31 +1.8
197,090 + Ac3H11_3638 0.31 +0.5
197,091 - Ac3H11_3638 0.31 +1.6
197,091 - Ac3H11_3638 0.31 +1.3
197,091 - Ac3H11_3638 0.31 +0.1
197,091 - Ac3H11_3638 0.31 +0.6
197,091 - Ac3H11_3638 0.31 +2.1
197,165 + Ac3H11_3638 0.40 +2.6
197,165 + Ac3H11_3638 0.40 +0.4
197,165 + Ac3H11_3638 0.40 -0.2
197,165 + Ac3H11_3638 0.40 +1.6
197,165 + Ac3H11_3638 0.40 -2.1
197,165 + Ac3H11_3638 0.40 -2.3
197,166 - Ac3H11_3638 0.40 +1.1
197,166 - Ac3H11_3638 0.40 +0.2
197,166 - Ac3H11_3638 0.40 +0.5
197,609 + +1.3
197,609 + +0.6
197,609 + +0.1
197,610 - -1.0
197,610 - -2.6
197,614 - +2.4

Or see this region's nucleotide sequence