Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_273

Experiment: Cisplatin 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_271 and Ac3H11_272 are separated by 10 nucleotidesAc3H11_272 and Ac3H11_273 are separated by 32 nucleotidesAc3H11_273 and Ac3H11_274 are separated by 33 nucleotides Ac3H11_271 - Topoisomerase IV subunit A (EC 5.99.1.-), at 94,124 to 96,481 _271 Ac3H11_272 - Lytic transglycosylase, catalytic, at 96,492 to 97,355 _272 Ac3H11_273 - Topoisomerase IV subunit B (EC 5.99.1.-), at 97,388 to 99,424 _273 Ac3H11_274 - Probable MFS transporter precursor, at 99,458 to 100,717 _274 Position (kb) 97 98 99 100Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 96.670 kb on + strand, within Ac3H11_272at 96.671 kb on - strand, within Ac3H11_272at 96.671 kb on - strand, within Ac3H11_272at 96.671 kb on - strand, within Ac3H11_272at 96.671 kb on - strand, within Ac3H11_272at 96.671 kb on - strand, within Ac3H11_272at 96.694 kb on + strand, within Ac3H11_272at 96.695 kb on - strand, within Ac3H11_272at 96.695 kb on - strand, within Ac3H11_272at 96.695 kb on - strand, within Ac3H11_272at 96.695 kb on - strand, within Ac3H11_272at 96.695 kb on - strand, within Ac3H11_272at 96.695 kb on - strand, within Ac3H11_272at 96.695 kb on - strand, within Ac3H11_272at 96.763 kb on + strand, within Ac3H11_272at 96.764 kb on - strand, within Ac3H11_272at 96.764 kb on - strand, within Ac3H11_272at 96.820 kb on + strand, within Ac3H11_272at 96.821 kb on - strand, within Ac3H11_272at 96.821 kb on - strand, within Ac3H11_272at 97.013 kb on - strand, within Ac3H11_272at 97.013 kb on - strand, within Ac3H11_272at 97.013 kb on - strand, within Ac3H11_272at 97.067 kb on - strand, within Ac3H11_272at 97.067 kb on - strand, within Ac3H11_272at 97.067 kb on - strand, within Ac3H11_272at 97.067 kb on - strand, within Ac3H11_272at 97.124 kb on - strand, within Ac3H11_272at 97.124 kb on - strand, within Ac3H11_272at 97.196 kb on - strand, within Ac3H11_272at 97.389 kb on + strandat 97.389 kb on + strandat 97.389 kb on + strandat 97.389 kb on + strandat 97.390 kb on - strandat 97.390 kb on - strandat 97.390 kb on - strandat 97.390 kb on - strandat 97.390 kb on - strandat 97.390 kb on - strandat 99.384 kb on - strandat 99.384 kb on - strandat 99.402 kb on + strandat 99.402 kb on + strandat 99.434 kb on + strandat 99.435 kb on - strandat 99.446 kb on + strandat 99.446 kb on + strandat 99.446 kb on + strandat 99.446 kb on + strandat 99.446 kb on + strandat 99.446 kb on + strandat 99.446 kb on + strandat 99.446 kb on + strandat 99.446 kb on + strandat 99.446 kb on + strandat 99.446 kb on + strandat 99.446 kb on + strandat 99.447 kb on - strandat 99.447 kb on - strandat 99.447 kb on - strandat 99.447 kb on - strandat 99.447 kb on - strandat 99.447 kb on - strandat 99.447 kb on - strandat 99.447 kb on - strandat 99.447 kb on - strandat 99.447 kb on - strandat 99.447 kb on - strandat 99.447 kb on - strandat 99.461 kb on + strandat 99.462 kb on - strandat 99.462 kb on - strandat 99.462 kb on - strandat 99.462 kb on - strandat 99.462 kb on - strandat 99.487 kb on + strandat 99.487 kb on + strandat 99.487 kb on + strandat 99.487 kb on + strandat 99.505 kb on + strandat 99.505 kb on + strandat 99.505 kb on + strandat 99.505 kb on + strandat 99.505 kb on + strandat 99.505 kb on + strandat 99.506 kb on - strandat 99.506 kb on - strandat 99.506 kb on - strandat 99.506 kb on - strandat 99.506 kb on - strandat 99.506 kb on - strandat 99.506 kb on - strandat 99.506 kb on - strandat 99.758 kb on + strand, within Ac3H11_274at 99.758 kb on + strand, within Ac3H11_274at 99.758 kb on + strand, within Ac3H11_274at 99.758 kb on + strand, within Ac3H11_274at 99.759 kb on - strand, within Ac3H11_274at 99.759 kb on - strand, within Ac3H11_274at 99.857 kb on + strand, within Ac3H11_274at 99.857 kb on + strand, within Ac3H11_274at 99.857 kb on + strand, within Ac3H11_274at 99.857 kb on + strand, within Ac3H11_274at 99.857 kb on + strand, within Ac3H11_274at 99.857 kb on + strand, within Ac3H11_274at 99.857 kb on + strand, within Ac3H11_274at 99.857 kb on + strand, within Ac3H11_274at 99.857 kb on + strand, within Ac3H11_274at 99.858 kb on - strand, within Ac3H11_274at 99.858 kb on - strand, within Ac3H11_274at 99.858 kb on - strand, within Ac3H11_274at 99.858 kb on - strand, within Ac3H11_274at 99.858 kb on - strand, within Ac3H11_274at 99.858 kb on - strand, within Ac3H11_274at 99.858 kb on - strand, within Ac3H11_274at 99.858 kb on - strand, within Ac3H11_274at 99.858 kb on - strand, within Ac3H11_274at 99.858 kb on - strand, within Ac3H11_274at 99.858 kb on - strand, within Ac3H11_274at 99.869 kb on + strand, within Ac3H11_274at 99.869 kb on + strand, within Ac3H11_274at 99.869 kb on + strand, within Ac3H11_274at 99.869 kb on + strand, within Ac3H11_274at 99.869 kb on + strand, within Ac3H11_274at 99.869 kb on + strand, within Ac3H11_274at 99.869 kb on + strand, within Ac3H11_274at 99.869 kb on + strand, within Ac3H11_274at 99.869 kb on + strand, within Ac3H11_274at 99.869 kb on + strand, within Ac3H11_274at 99.869 kb on + strand, within Ac3H11_274at 99.869 kb on + strand, within Ac3H11_274at 99.869 kb on + strand, within Ac3H11_274at 99.869 kb on + strand, within Ac3H11_274at 99.870 kb on - strand, within Ac3H11_274at 99.870 kb on - strand, within Ac3H11_274at 99.870 kb on - strand, within Ac3H11_274at 99.870 kb on - strand, within Ac3H11_274at 99.870 kb on - strand, within Ac3H11_274at 99.870 kb on - strand, within Ac3H11_274at 99.870 kb on - strand, within Ac3H11_274at 99.870 kb on - strand, within Ac3H11_274at 99.870 kb on - strand, within Ac3H11_274at 99.870 kb on - strand, within Ac3H11_274at 99.870 kb on - strand, within Ac3H11_274at 99.870 kb on - strand, within Ac3H11_274at 99.870 kb on - strand, within Ac3H11_274at 99.870 kb on - strand, within Ac3H11_274at 99.870 kb on - strand, within Ac3H11_274at 99.870 kb on - strand, within Ac3H11_274at 99.870 kb on - strand, within Ac3H11_274at 99.870 kb on - strand, within Ac3H11_274at 99.870 kb on - strand, within Ac3H11_274at 100.172 kb on + strand, within Ac3H11_274at 100.173 kb on - strand, within Ac3H11_274at 100.223 kb on + strand, within Ac3H11_274at 100.224 kb on - strand, within Ac3H11_274at 100.224 kb on - strand, within Ac3H11_274at 100.224 kb on - strand, within Ac3H11_274at 100.262 kb on + strand, within Ac3H11_274at 100.262 kb on + strand, within Ac3H11_274at 100.262 kb on + strand, within Ac3H11_274at 100.262 kb on + strand, within Ac3H11_274at 100.262 kb on + strand, within Ac3H11_274at 100.263 kb on - strand, within Ac3H11_274at 100.263 kb on - strand, within Ac3H11_274at 100.263 kb on - strand, within Ac3H11_274at 100.263 kb on - strand, within Ac3H11_274at 100.263 kb on - strand, within Ac3H11_274at 100.293 kb on + strand, within Ac3H11_274at 100.293 kb on + strand, within Ac3H11_274at 100.294 kb on - strand, within Ac3H11_274at 100.294 kb on - strand, within Ac3H11_274at 100.294 kb on - strand, within Ac3H11_274at 100.304 kb on + strand, within Ac3H11_274at 100.304 kb on + strand, within Ac3H11_274at 100.304 kb on + strand, within Ac3H11_274at 100.304 kb on + strand, within Ac3H11_274at 100.304 kb on + strand, within Ac3H11_274at 100.304 kb on + strand, within Ac3H11_274at 100.304 kb on + strand, within Ac3H11_274at 100.305 kb on - strand, within Ac3H11_274at 100.305 kb on - strand, within Ac3H11_274at 100.305 kb on - strand, within Ac3H11_274at 100.305 kb on - strand, within Ac3H11_274at 100.305 kb on - strand, within Ac3H11_274at 100.305 kb on - strand, within Ac3H11_274at 100.305 kb on - strand, within Ac3H11_274at 100.305 kb on - strand, within Ac3H11_274at 100.343 kb on + strand, within Ac3H11_274at 100.343 kb on + strand, within Ac3H11_274at 100.343 kb on + strand, within Ac3H11_274at 100.343 kb on + strand, within Ac3H11_274at 100.343 kb on + strand, within Ac3H11_274at 100.343 kb on + strand, within Ac3H11_274at 100.343 kb on + strand, within Ac3H11_274at 100.343 kb on + strand, within Ac3H11_274at 100.344 kb on - strand, within Ac3H11_274at 100.344 kb on - strand, within Ac3H11_274at 100.344 kb on - strand, within Ac3H11_274at 100.357 kb on + strand, within Ac3H11_274at 100.357 kb on + strand, within Ac3H11_274at 100.357 kb on + strand, within Ac3H11_274at 100.358 kb on - strand, within Ac3H11_274at 100.361 kb on + strand, within Ac3H11_274at 100.361 kb on + strand, within Ac3H11_274at 100.361 kb on + strand, within Ac3H11_274at 100.361 kb on + strand, within Ac3H11_274at 100.361 kb on + strand, within Ac3H11_274at 100.361 kb on + strand, within Ac3H11_274at 100.361 kb on + strand, within Ac3H11_274at 100.361 kb on + strand, within Ac3H11_274at 100.361 kb on + strand, within Ac3H11_274at 100.362 kb on - strand, within Ac3H11_274at 100.362 kb on - strand, within Ac3H11_274at 100.362 kb on - strand, within Ac3H11_274at 100.362 kb on - strand, within Ac3H11_274at 100.362 kb on - strand, within Ac3H11_274at 100.424 kb on + strand, within Ac3H11_274at 100.424 kb on + strand, within Ac3H11_274at 100.424 kb on + strand, within Ac3H11_274at 100.424 kb on + strand, within Ac3H11_274at 100.424 kb on + strand, within Ac3H11_274at 100.424 kb on + strand, within Ac3H11_274at 100.424 kb on + strand, within Ac3H11_274at 100.424 kb on + strand, within Ac3H11_274at 100.424 kb on + strand, within Ac3H11_274at 100.424 kb on + strand, within Ac3H11_274at 100.424 kb on + strand, within Ac3H11_274at 100.424 kb on + strand, within Ac3H11_274at 100.424 kb on + strand, within Ac3H11_274at 100.424 kb on + strand, within Ac3H11_274at 100.424 kb on + strand, within Ac3H11_274at 100.424 kb on + strand, within Ac3H11_274at 100.424 kb on + strand, within Ac3H11_274at 100.424 kb on + strand, within Ac3H11_274at 100.424 kb on + strand, within Ac3H11_274

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0025 mg/ml
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96,670 + Ac3H11_272 0.21 -1.3
96,671 - Ac3H11_272 0.21 -1.2
96,671 - Ac3H11_272 0.21 -1.8
96,671 - Ac3H11_272 0.21 +2.5
96,671 - Ac3H11_272 0.21 -0.5
96,671 - Ac3H11_272 0.21 -1.5
96,694 + Ac3H11_272 0.23 -0.3
96,695 - Ac3H11_272 0.23 -2.2
96,695 - Ac3H11_272 0.23 +0.1
96,695 - Ac3H11_272 0.23 +0.5
96,695 - Ac3H11_272 0.23 -2.4
96,695 - Ac3H11_272 0.23 -0.1
96,695 - Ac3H11_272 0.23 -1.9
96,695 - Ac3H11_272 0.23 +0.9
96,763 + Ac3H11_272 0.31 -2.1
96,764 - Ac3H11_272 0.31 +0.3
96,764 - Ac3H11_272 0.31 -0.1
96,820 + Ac3H11_272 0.38 -1.9
96,821 - Ac3H11_272 0.38 +1.2
96,821 - Ac3H11_272 0.38 -0.4
97,013 - Ac3H11_272 0.60 -1.4
97,013 - Ac3H11_272 0.60 -0.3
97,013 - Ac3H11_272 0.60 +2.9
97,067 - Ac3H11_272 0.67 +0.4
97,067 - Ac3H11_272 0.67 -0.4
97,067 - Ac3H11_272 0.67 -1.1
97,067 - Ac3H11_272 0.67 -1.7
97,124 - Ac3H11_272 0.73 -0.1
97,124 - Ac3H11_272 0.73 +1.4
97,196 - Ac3H11_272 0.81 -1.3
97,389 + -2.7
97,389 + +1.8
97,389 + -1.7
97,389 + -1.9
97,390 - +0.1
97,390 - +0.2
97,390 - -0.8
97,390 - -1.3
97,390 - +1.5
97,390 - -1.2
99,384 - -0.8
99,384 - +0.8
99,402 + -0.0
99,402 + -1.8
99,434 + +1.2
99,435 - +0.9
99,446 + -1.9
99,446 + -0.8
99,446 + -1.2
99,446 + -0.6
99,446 + +1.9
99,446 + -0.5
99,446 + +1.5
99,446 + -1.1
99,446 + -1.7
99,446 + +0.0
99,446 + +0.2
99,446 + +0.9
99,447 - +1.8
99,447 - -0.1
99,447 - -0.4
99,447 - +1.8
99,447 - +1.0
99,447 - +0.9
99,447 - +1.7
99,447 - +2.0
99,447 - -1.8
99,447 - +0.5
99,447 - -0.0
99,447 - +1.4
99,461 + +0.4
99,462 - -1.6
99,462 - -0.2
99,462 - -1.3
99,462 - +1.0
99,462 - +0.4
99,487 + +0.7
99,487 + +1.0
99,487 + +1.8
99,487 + -0.8
99,505 + -0.8
99,505 + -1.1
99,505 + +0.5
99,505 + -0.8
99,505 + -0.7
99,505 + -1.0
99,506 - +0.8
99,506 - +0.4
99,506 - +1.1
99,506 - +0.9
99,506 - +1.7
99,506 - +0.1
99,506 - -0.9
99,506 - +1.0
99,758 + Ac3H11_274 0.24 -1.5
99,758 + Ac3H11_274 0.24 -0.9
99,758 + Ac3H11_274 0.24 +0.8
99,758 + Ac3H11_274 0.24 +3.5
99,759 - Ac3H11_274 0.24 -0.7
99,759 - Ac3H11_274 0.24 +0.2
99,857 + Ac3H11_274 0.32 -1.1
99,857 + Ac3H11_274 0.32 +1.4
99,857 + Ac3H11_274 0.32 -1.7
99,857 + Ac3H11_274 0.32 +0.8
99,857 + Ac3H11_274 0.32 -0.1
99,857 + Ac3H11_274 0.32 +2.0
99,857 + Ac3H11_274 0.32 -0.1
99,857 + Ac3H11_274 0.32 +0.0
99,857 + Ac3H11_274 0.32 +2.8
99,858 - Ac3H11_274 0.32 -0.9
99,858 - Ac3H11_274 0.32 -1.7
99,858 - Ac3H11_274 0.32 +2.1
99,858 - Ac3H11_274 0.32 -0.8
99,858 - Ac3H11_274 0.32 +1.1
99,858 - Ac3H11_274 0.32 +0.3
99,858 - Ac3H11_274 0.32 -1.1
99,858 - Ac3H11_274 0.32 +2.5
99,858 - Ac3H11_274 0.32 -3.0
99,858 - Ac3H11_274 0.32 +1.0
99,858 - Ac3H11_274 0.32 -3.8
99,869 + Ac3H11_274 0.33 +0.3
99,869 + Ac3H11_274 0.33 +1.7
99,869 + Ac3H11_274 0.33 -3.4
99,869 + Ac3H11_274 0.33 -3.3
99,869 + Ac3H11_274 0.33 -1.1
99,869 + Ac3H11_274 0.33 +2.2
99,869 + Ac3H11_274 0.33 -1.7
99,869 + Ac3H11_274 0.33 -0.5
99,869 + Ac3H11_274 0.33 -0.9
99,869 + Ac3H11_274 0.33 +2.4
99,869 + Ac3H11_274 0.33 +0.5
99,869 + Ac3H11_274 0.33 +0.5
99,869 + Ac3H11_274 0.33 +1.1
99,869 + Ac3H11_274 0.33 +0.9
99,870 - Ac3H11_274 0.33 -2.7
99,870 - Ac3H11_274 0.33 -0.4
99,870 - Ac3H11_274 0.33 +0.8
99,870 - Ac3H11_274 0.33 -0.1
99,870 - Ac3H11_274 0.33 -1.2
99,870 - Ac3H11_274 0.33 -1.2
99,870 - Ac3H11_274 0.33 +0.6
99,870 - Ac3H11_274 0.33 +1.5
99,870 - Ac3H11_274 0.33 +1.2
99,870 - Ac3H11_274 0.33 -0.5
99,870 - Ac3H11_274 0.33 +0.5
99,870 - Ac3H11_274 0.33 -1.3
99,870 - Ac3H11_274 0.33 -1.7
99,870 - Ac3H11_274 0.33 +0.5
99,870 - Ac3H11_274 0.33 +0.2
99,870 - Ac3H11_274 0.33 +0.0
99,870 - Ac3H11_274 0.33 +1.2
99,870 - Ac3H11_274 0.33 +1.0
99,870 - Ac3H11_274 0.33 -1.5
100,172 + Ac3H11_274 0.57 +0.1
100,173 - Ac3H11_274 0.57 +0.4
100,223 + Ac3H11_274 0.61 +2.0
100,224 - Ac3H11_274 0.61 +1.0
100,224 - Ac3H11_274 0.61 +1.1
100,224 - Ac3H11_274 0.61 +0.3
100,262 + Ac3H11_274 0.64 +0.5
100,262 + Ac3H11_274 0.64 +0.7
100,262 + Ac3H11_274 0.64 -1.1
100,262 + Ac3H11_274 0.64 +0.4
100,262 + Ac3H11_274 0.64 -1.6
100,263 - Ac3H11_274 0.64 -0.7
100,263 - Ac3H11_274 0.64 -1.1
100,263 - Ac3H11_274 0.64 +0.7
100,263 - Ac3H11_274 0.64 +1.0
100,263 - Ac3H11_274 0.64 -0.7
100,293 + Ac3H11_274 0.66 -2.1
100,293 + Ac3H11_274 0.66 -1.8
100,294 - Ac3H11_274 0.66 +0.2
100,294 - Ac3H11_274 0.66 -1.7
100,294 - Ac3H11_274 0.66 -1.1
100,304 + Ac3H11_274 0.67 +1.3
100,304 + Ac3H11_274 0.67 +0.3
100,304 + Ac3H11_274 0.67 +0.2
100,304 + Ac3H11_274 0.67 -1.5
100,304 + Ac3H11_274 0.67 -1.3
100,304 + Ac3H11_274 0.67 +1.3
100,304 + Ac3H11_274 0.67 +1.5
100,305 - Ac3H11_274 0.67 +0.7
100,305 - Ac3H11_274 0.67 -0.1
100,305 - Ac3H11_274 0.67 +1.3
100,305 - Ac3H11_274 0.67 +0.0
100,305 - Ac3H11_274 0.67 +1.8
100,305 - Ac3H11_274 0.67 -2.1
100,305 - Ac3H11_274 0.67 +0.3
100,305 - Ac3H11_274 0.67 -0.7
100,343 + Ac3H11_274 0.70 -3.6
100,343 + Ac3H11_274 0.70 -1.1
100,343 + Ac3H11_274 0.70 +1.2
100,343 + Ac3H11_274 0.70 -1.2
100,343 + Ac3H11_274 0.70 -0.8
100,343 + Ac3H11_274 0.70 -0.1
100,343 + Ac3H11_274 0.70 -2.1
100,343 + Ac3H11_274 0.70 -0.7
100,344 - Ac3H11_274 0.70 +1.3
100,344 - Ac3H11_274 0.70 -2.3
100,344 - Ac3H11_274 0.70 +0.4
100,357 + Ac3H11_274 0.71 -0.6
100,357 + Ac3H11_274 0.71 -2.2
100,357 + Ac3H11_274 0.71 +0.6
100,358 - Ac3H11_274 0.71 -1.5
100,361 + Ac3H11_274 0.72 +1.5
100,361 + Ac3H11_274 0.72 -3.3
100,361 + Ac3H11_274 0.72 +1.3
100,361 + Ac3H11_274 0.72 +0.8
100,361 + Ac3H11_274 0.72 +0.7
100,361 + Ac3H11_274 0.72 -0.4
100,361 + Ac3H11_274 0.72 -1.2
100,361 + Ac3H11_274 0.72 +1.9
100,361 + Ac3H11_274 0.72 +2.3
100,362 - Ac3H11_274 0.72 +2.5
100,362 - Ac3H11_274 0.72 +1.0
100,362 - Ac3H11_274 0.72 +1.0
100,362 - Ac3H11_274 0.72 +0.4
100,362 - Ac3H11_274 0.72 -0.3
100,424 + Ac3H11_274 0.77 +0.4
100,424 + Ac3H11_274 0.77 -2.1
100,424 + Ac3H11_274 0.77 -0.5
100,424 + Ac3H11_274 0.77 +0.9
100,424 + Ac3H11_274 0.77 +2.7
100,424 + Ac3H11_274 0.77 -0.6
100,424 + Ac3H11_274 0.77 -2.7
100,424 + Ac3H11_274 0.77 -0.5
100,424 + Ac3H11_274 0.77 +1.0
100,424 + Ac3H11_274 0.77 +1.1
100,424 + Ac3H11_274 0.77 +0.2
100,424 + Ac3H11_274 0.77 +0.3
100,424 + Ac3H11_274 0.77 -1.5
100,424 + Ac3H11_274 0.77 -2.2
100,424 + Ac3H11_274 0.77 +1.5
100,424 + Ac3H11_274 0.77 +0.8
100,424 + Ac3H11_274 0.77 -0.1
100,424 + Ac3H11_274 0.77 +1.0
100,424 + Ac3H11_274 0.77 -1.9

Or see this region's nucleotide sequence