Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2003

Experiment: Cisplatin 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2002 and Ac3H11_2003 are separated by 58 nucleotidesAc3H11_2003 and Ac3H11_2004 are separated by 189 nucleotidesAc3H11_2004 and Ac3H11_2005 are separated by 98 nucleotides Ac3H11_2002 - C4-type zinc finger protein, DksA/TraR family, at 218,690 to 219,517 _2002 Ac3H11_2003 - FIG00715336: hypothetical protein, at 219,576 to 221,330 _2003 Ac3H11_2004 - ATP-dependent protease HslV (EC 3.4.25.-), at 221,520 to 222,083 _2004 Ac3H11_2005 - ATP-dependent hsl protease ATP-binding subunit HslU, at 222,182 to 223,507 _2005 Position (kb) 219 220 221 222Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 218.594 kb on + strandat 218.594 kb on + strandat 218.594 kb on + strandat 218.594 kb on + strandat 218.610 kb on + strandat 218.670 kb on + strandat 218.961 kb on + strand, within Ac3H11_2002at 219.008 kb on + strand, within Ac3H11_2002at 219.008 kb on + strand, within Ac3H11_2002at 219.008 kb on + strand, within Ac3H11_2002at 219.012 kb on + strand, within Ac3H11_2002at 219.012 kb on + strand, within Ac3H11_2002at 219.565 kb on + strandat 219.565 kb on + strandat 219.693 kb on + strandat 219.693 kb on + strandat 219.693 kb on + strandat 219.694 kb on - strandat 220.023 kb on + strand, within Ac3H11_2003at 220.023 kb on + strand, within Ac3H11_2003at 220.023 kb on + strand, within Ac3H11_2003at 220.023 kb on + strand, within Ac3H11_2003at 220.023 kb on + strand, within Ac3H11_2003at 220.023 kb on + strand, within Ac3H11_2003at 220.023 kb on + strand, within Ac3H11_2003at 220.024 kb on - strand, within Ac3H11_2003at 220.024 kb on - strand, within Ac3H11_2003at 220.024 kb on - strand, within Ac3H11_2003at 220.024 kb on - strand, within Ac3H11_2003at 220.024 kb on - strand, within Ac3H11_2003at 220.024 kb on - strand, within Ac3H11_2003at 220.024 kb on - strand, within Ac3H11_2003at 220.024 kb on - strand, within Ac3H11_2003at 220.024 kb on - strand, within Ac3H11_2003at 220.024 kb on - strand, within Ac3H11_2003at 220.249 kb on + strand, within Ac3H11_2003at 220.249 kb on + strand, within Ac3H11_2003at 220.249 kb on + strand, within Ac3H11_2003at 220.249 kb on + strand, within Ac3H11_2003at 220.249 kb on + strand, within Ac3H11_2003at 220.249 kb on + strand, within Ac3H11_2003at 220.383 kb on + strand, within Ac3H11_2003at 220.444 kb on - strand, within Ac3H11_2003at 220.444 kb on - strand, within Ac3H11_2003at 220.444 kb on - strand, within Ac3H11_2003at 220.444 kb on - strand, within Ac3H11_2003at 220.890 kb on + strand, within Ac3H11_2003at 220.890 kb on + strand, within Ac3H11_2003at 220.890 kb on + strand, within Ac3H11_2003at 220.890 kb on + strand, within Ac3H11_2003at 220.890 kb on + strand, within Ac3H11_2003at 220.890 kb on + strand, within Ac3H11_2003at 220.891 kb on - strand, within Ac3H11_2003at 220.891 kb on - strand, within Ac3H11_2003at 220.891 kb on - strand, within Ac3H11_2003at 220.891 kb on - strand, within Ac3H11_2003at 220.891 kb on - strand, within Ac3H11_2003at 220.902 kb on + strand, within Ac3H11_2003at 220.902 kb on + strand, within Ac3H11_2003at 220.902 kb on + strand, within Ac3H11_2003at 220.902 kb on + strand, within Ac3H11_2003at 220.902 kb on + strand, within Ac3H11_2003at 220.903 kb on - strand, within Ac3H11_2003at 220.903 kb on - strand, within Ac3H11_2003at 220.903 kb on - strand, within Ac3H11_2003at 220.903 kb on - strand, within Ac3H11_2003at 220.903 kb on - strand, within Ac3H11_2003at 221.440 kb on + strandat 221.440 kb on + strandat 221.440 kb on + strandat 221.440 kb on + strandat 221.440 kb on + strandat 221.440 kb on + strandat 221.440 kb on + strandat 221.440 kb on + strandat 221.441 kb on - strandat 221.441 kb on - strandat 221.441 kb on - strandat 221.441 kb on - strandat 221.441 kb on - strandat 221.441 kb on - strandat 221.441 kb on - strandat 221.441 kb on - strandat 221.462 kb on + strandat 221.462 kb on + strandat 221.462 kb on + strandat 221.462 kb on + strandat 221.462 kb on + strandat 221.462 kb on + strandat 221.462 kb on + strandat 221.462 kb on + strandat 221.463 kb on - strandat 221.463 kb on - strandat 221.463 kb on - strandat 221.463 kb on - strandat 221.463 kb on - strandat 221.519 kb on + strandat 221.519 kb on + strandat 221.519 kb on + strandat 221.520 kb on - strandat 221.520 kb on - strandat 221.520 kb on - strandat 221.520 kb on - strandat 221.520 kb on - strandat 221.679 kb on + strand, within Ac3H11_2004at 221.679 kb on + strandat 221.679 kb on + strand, within Ac3H11_2004at 221.680 kb on - strand, within Ac3H11_2004at 221.680 kb on - strand, within Ac3H11_2004at 221.680 kb on - strand, within Ac3H11_2004at 221.680 kb on - strand, within Ac3H11_2004at 221.695 kb on + strand, within Ac3H11_2004at 221.696 kb on - strand, within Ac3H11_2004at 221.950 kb on - strand, within Ac3H11_2004at 222.048 kb on + strandat 222.048 kb on + strandat 222.048 kb on + strandat 222.048 kb on + strandat 222.049 kb on - strandat 222.049 kb on - strandat 222.049 kb on - strandat 222.049 kb on - strandat 222.049 kb on - strandat 222.081 kb on + strandat 222.081 kb on + strandat 222.082 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0025 mg/ml
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218,594 + -3.4
218,594 + -0.6
218,594 + -2.4
218,594 + -0.9
218,610 + -3.4
218,670 + -0.4
218,961 + Ac3H11_2002 0.33 -2.2
219,008 + Ac3H11_2002 0.38 -0.2
219,008 + Ac3H11_2002 0.38 -0.5
219,008 + Ac3H11_2002 0.38 -1.9
219,012 + Ac3H11_2002 0.39 -1.7
219,012 + Ac3H11_2002 0.39 +1.2
219,565 + +2.0
219,565 + -1.3
219,693 + -0.2
219,693 + +1.8
219,693 + -0.0
219,694 - +0.8
220,023 + Ac3H11_2003 0.25 +0.7
220,023 + Ac3H11_2003 0.25 -0.1
220,023 + Ac3H11_2003 0.25 +3.2
220,023 + Ac3H11_2003 0.25 -2.1
220,023 + Ac3H11_2003 0.25 -0.8
220,023 + Ac3H11_2003 0.25 -1.2
220,023 + Ac3H11_2003 0.25 -0.9
220,024 - Ac3H11_2003 0.26 -0.1
220,024 - Ac3H11_2003 0.26 -3.7
220,024 - Ac3H11_2003 0.26 -1.1
220,024 - Ac3H11_2003 0.26 +1.2
220,024 - Ac3H11_2003 0.26 -1.9
220,024 - Ac3H11_2003 0.26 -0.6
220,024 - Ac3H11_2003 0.26 +2.2
220,024 - Ac3H11_2003 0.26 +2.5
220,024 - Ac3H11_2003 0.26 -2.4
220,024 - Ac3H11_2003 0.26 +1.7
220,249 + Ac3H11_2003 0.38 +1.0
220,249 + Ac3H11_2003 0.38 -0.4
220,249 + Ac3H11_2003 0.38 +0.4
220,249 + Ac3H11_2003 0.38 -2.5
220,249 + Ac3H11_2003 0.38 -0.7
220,249 + Ac3H11_2003 0.38 -1.9
220,383 + Ac3H11_2003 0.46 -1.3
220,444 - Ac3H11_2003 0.49 +1.3
220,444 - Ac3H11_2003 0.49 -1.4
220,444 - Ac3H11_2003 0.49 -1.7
220,444 - Ac3H11_2003 0.49 +0.9
220,890 + Ac3H11_2003 0.75 -0.1
220,890 + Ac3H11_2003 0.75 +0.3
220,890 + Ac3H11_2003 0.75 +1.3
220,890 + Ac3H11_2003 0.75 -2.0
220,890 + Ac3H11_2003 0.75 -2.4
220,890 + Ac3H11_2003 0.75 -1.0
220,891 - Ac3H11_2003 0.75 +0.3
220,891 - Ac3H11_2003 0.75 -1.2
220,891 - Ac3H11_2003 0.75 -3.0
220,891 - Ac3H11_2003 0.75 -3.1
220,891 - Ac3H11_2003 0.75 -0.2
220,902 + Ac3H11_2003 0.76 +1.3
220,902 + Ac3H11_2003 0.76 +1.1
220,902 + Ac3H11_2003 0.76 -2.7
220,902 + Ac3H11_2003 0.76 -3.3
220,902 + Ac3H11_2003 0.76 +1.3
220,903 - Ac3H11_2003 0.76 -0.1
220,903 - Ac3H11_2003 0.76 +0.4
220,903 - Ac3H11_2003 0.76 +1.1
220,903 - Ac3H11_2003 0.76 +3.3
220,903 - Ac3H11_2003 0.76 -1.2
221,440 + +2.1
221,440 + -1.4
221,440 + +0.6
221,440 + -3.0
221,440 + +0.1
221,440 + +0.1
221,440 + -2.5
221,440 + -3.2
221,441 - +0.4
221,441 - -2.0
221,441 - +0.4
221,441 - +1.6
221,441 - +2.0
221,441 - -2.5
221,441 - -3.6
221,441 - +0.2
221,462 + +0.1
221,462 + -0.6
221,462 + -0.4
221,462 + -0.4
221,462 + -1.2
221,462 + +0.4
221,462 + -1.2
221,462 + +0.2
221,463 - -3.2
221,463 - -2.3
221,463 - +1.8
221,463 - -0.5
221,463 - +0.1
221,519 + -2.2
221,519 + -1.2
221,519 + -1.8
221,520 - +2.2
221,520 - -1.7
221,520 - +0.7
221,520 - +2.9
221,520 - +0.4
221,679 + Ac3H11_2004 0.28 +0.6
221,679 + +1.6
221,679 + Ac3H11_2004 0.28 -2.0
221,680 - Ac3H11_2004 0.28 -1.7
221,680 - Ac3H11_2004 0.28 +0.5
221,680 - Ac3H11_2004 0.28 +0.2
221,680 - Ac3H11_2004 0.28 +0.1
221,695 + Ac3H11_2004 0.31 -3.3
221,696 - Ac3H11_2004 0.31 -2.8
221,950 - Ac3H11_2004 0.76 -1.0
222,048 + +1.6
222,048 + +3.2
222,048 + +0.6
222,048 + -0.7
222,049 - -1.1
222,049 - -3.6
222,049 - -0.9
222,049 - +2.5
222,049 - -3.1
222,081 + -1.7
222,081 + -2.1
222,082 - +0.5

Or see this region's nucleotide sequence