Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1936

Experiment: Cisplatin 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1935 and Ac3H11_1936 are separated by 7 nucleotidesAc3H11_1936 and Ac3H11_1937 overlap by 4 nucleotidesAc3H11_1937 and Ac3H11_1938 overlap by 4 nucleotides Ac3H11_1935 - Acetyl-coenzyme A synthetase (EC 6.2.1.1), at 150,353 to 152,209 _1935 Ac3H11_1936 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 152,217 to 153,035 _1936 Ac3H11_1937 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 153,032 to 153,871 _1937 Ac3H11_1938 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 153,868 to 154,944 _1938 Position (kb) 152 153 154Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 151.260 kb on + strand, within Ac3H11_1935at 151.315 kb on - strand, within Ac3H11_1935at 151.315 kb on - strand, within Ac3H11_1935at 151.425 kb on + strand, within Ac3H11_1935at 151.425 kb on + strand, within Ac3H11_1935at 151.539 kb on + strand, within Ac3H11_1935at 151.540 kb on - strand, within Ac3H11_1935at 151.600 kb on - strand, within Ac3H11_1935at 151.600 kb on - strand, within Ac3H11_1935at 151.863 kb on + strand, within Ac3H11_1935at 151.863 kb on + strand, within Ac3H11_1935at 151.893 kb on + strand, within Ac3H11_1935at 151.894 kb on - strand, within Ac3H11_1935at 152.182 kb on + strandat 152.209 kb on + strandat 152.210 kb on - strandat 152.285 kb on - strandat 152.362 kb on + strand, within Ac3H11_1936at 152.362 kb on + strand, within Ac3H11_1936at 152.362 kb on + strand, within Ac3H11_1936at 152.363 kb on - strand, within Ac3H11_1936at 152.369 kb on - strand, within Ac3H11_1936at 152.369 kb on - strand, within Ac3H11_1936at 152.577 kb on + strand, within Ac3H11_1936at 152.578 kb on - strand, within Ac3H11_1936at 152.621 kb on - strand, within Ac3H11_1936at 152.674 kb on + strand, within Ac3H11_1936at 152.675 kb on - strand, within Ac3H11_1936at 152.675 kb on - strand, within Ac3H11_1936at 152.675 kb on - strand, within Ac3H11_1936at 152.997 kb on + strandat 153.102 kb on + strandat 153.102 kb on + strandat 153.418 kb on - strand, within Ac3H11_1937at 153.678 kb on + strand, within Ac3H11_1937at 153.705 kb on + strand, within Ac3H11_1937at 153.705 kb on + strand, within Ac3H11_1937at 153.706 kb on - strand, within Ac3H11_1937at 153.706 kb on - strand, within Ac3H11_1937at 154.022 kb on + strand, within Ac3H11_1938at 154.023 kb on - strand, within Ac3H11_1938at 154.023 kb on - strand, within Ac3H11_1938at 154.023 kb on - strand, within Ac3H11_1938at 154.023 kb on - strand, within Ac3H11_1938

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0025 mg/ml
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151,260 + Ac3H11_1935 0.49 -1.3
151,315 - Ac3H11_1935 0.52 -0.8
151,315 - Ac3H11_1935 0.52 -2.7
151,425 + Ac3H11_1935 0.58 -2.3
151,425 + Ac3H11_1935 0.58 +1.4
151,539 + Ac3H11_1935 0.64 +1.3
151,540 - Ac3H11_1935 0.64 -4.0
151,600 - Ac3H11_1935 0.67 +0.9
151,600 - Ac3H11_1935 0.67 +0.8
151,863 + Ac3H11_1935 0.81 -0.8
151,863 + Ac3H11_1935 0.81 +0.0
151,893 + Ac3H11_1935 0.83 -1.8
151,894 - Ac3H11_1935 0.83 -0.8
152,182 + -1.7
152,209 + +1.1
152,210 - -0.0
152,285 - -3.1
152,362 + Ac3H11_1936 0.18 -0.9
152,362 + Ac3H11_1936 0.18 +0.2
152,362 + Ac3H11_1936 0.18 -0.1
152,363 - Ac3H11_1936 0.18 +1.1
152,369 - Ac3H11_1936 0.19 -3.7
152,369 - Ac3H11_1936 0.19 +1.4
152,577 + Ac3H11_1936 0.44 +0.9
152,578 - Ac3H11_1936 0.44 +1.0
152,621 - Ac3H11_1936 0.49 -2.7
152,674 + Ac3H11_1936 0.56 +0.2
152,675 - Ac3H11_1936 0.56 -1.2
152,675 - Ac3H11_1936 0.56 -0.1
152,675 - Ac3H11_1936 0.56 -1.9
152,997 + +1.3
153,102 + +1.0
153,102 + +0.6
153,418 - Ac3H11_1937 0.46 +1.1
153,678 + Ac3H11_1937 0.77 -2.4
153,705 + Ac3H11_1937 0.80 -0.7
153,705 + Ac3H11_1937 0.80 -2.4
153,706 - Ac3H11_1937 0.80 +0.1
153,706 - Ac3H11_1937 0.80 -1.5
154,022 + Ac3H11_1938 0.14 -3.1
154,023 - Ac3H11_1938 0.14 -2.2
154,023 - Ac3H11_1938 0.14 -0.9
154,023 - Ac3H11_1938 0.14 +0.9
154,023 - Ac3H11_1938 0.14 -1.0

Or see this region's nucleotide sequence