Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1769

Experiment: Cisplatin 0.0025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_1768 and Ac3H11_1769 are separated by 310 nucleotidesAc3H11_1769 and Ac3H11_1770 are separated by 32 nucleotides Ac3H11_1768 - LysR family transcriptional regulator y2377 (Yersinia pestis KIM), at 382,652 to 383,551 _1768 Ac3H11_1769 - Seryl-tRNA synthetase (EC 6.1.1.11), at 383,862 to 385,223 _1769 Ac3H11_1770 - Threonine dehydratase (EC 4.3.1.19), at 385,256 to 386,197 _1770 Position (kb) 383 384 385 386Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 383.053 kb on - strand, within Ac3H11_1768at 383.137 kb on - strand, within Ac3H11_1768at 383.444 kb on + strand, within Ac3H11_1768at 383.444 kb on + strand, within Ac3H11_1768at 383.444 kb on + strand, within Ac3H11_1768at 383.450 kb on + strand, within Ac3H11_1768at 383.450 kb on + strand, within Ac3H11_1768at 383.451 kb on - strand, within Ac3H11_1768at 383.451 kb on - strand, within Ac3H11_1768at 383.596 kb on + strandat 383.597 kb on - strandat 383.656 kb on + strandat 383.656 kb on + strandat 383.657 kb on - strandat 383.657 kb on - strandat 383.744 kb on + strandat 383.744 kb on + strandat 383.745 kb on - strandat 383.792 kb on + strandat 383.792 kb on + strandat 383.792 kb on + strandat 383.792 kb on + strandat 383.793 kb on - strandat 383.793 kb on - strandat 383.793 kb on - strandat 383.793 kb on - strandat 383.798 kb on + strandat 383.798 kb on + strandat 383.799 kb on - strandat 383.799 kb on - strandat 385.235 kb on - strandat 385.329 kb on + strandat 385.329 kb on + strandat 385.329 kb on + strandat 385.330 kb on - strandat 385.756 kb on - strand, within Ac3H11_1770at 385.821 kb on + strand, within Ac3H11_1770at 385.821 kb on + strand, within Ac3H11_1770at 385.822 kb on - strand, within Ac3H11_1770at 386.016 kb on + strand, within Ac3H11_1770

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0025 mg/ml
remove
383,053 - Ac3H11_1768 0.45 +0.2
383,137 - Ac3H11_1768 0.54 -2.1
383,444 + Ac3H11_1768 0.88 +0.7
383,444 + Ac3H11_1768 0.88 +1.0
383,444 + Ac3H11_1768 0.88 -1.1
383,450 + Ac3H11_1768 0.89 -0.1
383,450 + Ac3H11_1768 0.89 +0.8
383,451 - Ac3H11_1768 0.89 -0.6
383,451 - Ac3H11_1768 0.89 +0.2
383,596 + -0.2
383,597 - +1.6
383,656 + -0.0
383,656 + -0.1
383,657 - -2.3
383,657 - -2.5
383,744 + +1.5
383,744 + +0.7
383,745 - -2.7
383,792 + +0.6
383,792 + -0.2
383,792 + -0.7
383,792 + -2.2
383,793 - -1.7
383,793 - +0.9
383,793 - -1.4
383,793 - -2.4
383,798 + -0.5
383,798 + +0.5
383,799 - -3.1
383,799 - -2.4
385,235 - +1.5
385,329 + +2.1
385,329 + +0.4
385,329 + -1.6
385,330 - +0.5
385,756 - Ac3H11_1770 0.53 -0.5
385,821 + Ac3H11_1770 0.60 -1.7
385,821 + Ac3H11_1770 0.60 +0.8
385,822 - Ac3H11_1770 0.60 +0.9
386,016 + Ac3H11_1770 0.81 -2.2

Or see this region's nucleotide sequence