Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1765

Experiment: Cisplatin 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1764 and Ac3H11_1765 overlap by 1 nucleotidesAc3H11_1765 and Ac3H11_1766 are separated by 317 nucleotides Ac3H11_1764 - Selenophosphate-dependent tRNA 2-selenouridine synthase, at 377,408 to 378,553 _1764 Ac3H11_1765 - Selenide,water dikinase (EC 2.7.9.3), at 378,553 to 379,605 _1765 Ac3H11_1766 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 379,923 to 381,038 _1766 Position (kb) 378 379 380Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 377.559 kb on + strand, within Ac3H11_1764at 377.559 kb on + strand, within Ac3H11_1764at 377.559 kb on + strand, within Ac3H11_1764at 377.560 kb on - strand, within Ac3H11_1764at 377.560 kb on - strand, within Ac3H11_1764at 377.560 kb on - strand, within Ac3H11_1764at 377.560 kb on - strand, within Ac3H11_1764at 377.562 kb on + strand, within Ac3H11_1764at 377.562 kb on + strand, within Ac3H11_1764at 377.562 kb on + strand, within Ac3H11_1764at 377.563 kb on - strand, within Ac3H11_1764at 377.563 kb on - strand, within Ac3H11_1764at 377.787 kb on + strand, within Ac3H11_1764at 377.787 kb on + strand, within Ac3H11_1764at 377.787 kb on + strand, within Ac3H11_1764at 377.787 kb on + strand, within Ac3H11_1764at 377.787 kb on + strand, within Ac3H11_1764at 377.787 kb on + strand, within Ac3H11_1764at 377.788 kb on - strand, within Ac3H11_1764at 377.788 kb on - strand, within Ac3H11_1764at 377.788 kb on - strand, within Ac3H11_1764at 377.788 kb on - strandat 378.183 kb on + strand, within Ac3H11_1764at 378.184 kb on - strand, within Ac3H11_1764at 378.204 kb on + strand, within Ac3H11_1764at 378.273 kb on + strand, within Ac3H11_1764at 378.273 kb on + strand, within Ac3H11_1764at 378.396 kb on + strand, within Ac3H11_1764at 378.397 kb on - strand, within Ac3H11_1764at 378.397 kb on - strand, within Ac3H11_1764at 378.397 kb on - strand, within Ac3H11_1764at 378.749 kb on + strand, within Ac3H11_1765at 378.749 kb on + strand, within Ac3H11_1765at 378.749 kb on + strand, within Ac3H11_1765at 378.750 kb on - strand, within Ac3H11_1765at 378.750 kb on - strand, within Ac3H11_1765at 378.800 kb on + strand, within Ac3H11_1765at 378.800 kb on + strand, within Ac3H11_1765at 378.800 kb on + strand, within Ac3H11_1765at 378.800 kb on + strand, within Ac3H11_1765at 378.800 kb on + strand, within Ac3H11_1765at 378.800 kb on + strand, within Ac3H11_1765at 378.800 kb on + strand, within Ac3H11_1765at 378.800 kb on + strand, within Ac3H11_1765at 378.800 kb on + strand, within Ac3H11_1765at 378.800 kb on + strand, within Ac3H11_1765at 378.801 kb on - strand, within Ac3H11_1765at 378.801 kb on - strand, within Ac3H11_1765at 378.801 kb on - strand, within Ac3H11_1765at 378.801 kb on - strand, within Ac3H11_1765at 378.801 kb on - strand, within Ac3H11_1765at 379.068 kb on - strand, within Ac3H11_1765at 379.313 kb on + strand, within Ac3H11_1765at 379.313 kb on + strand, within Ac3H11_1765at 379.313 kb on + strand, within Ac3H11_1765at 379.314 kb on - strand, within Ac3H11_1765at 379.314 kb on - strand, within Ac3H11_1765at 379.314 kb on - strand, within Ac3H11_1765at 379.314 kb on - strand, within Ac3H11_1765at 379.314 kb on - strand, within Ac3H11_1765at 379.427 kb on + strand, within Ac3H11_1765at 379.428 kb on - strand, within Ac3H11_1765at 379.428 kb on - strand, within Ac3H11_1765at 379.428 kb on - strand, within Ac3H11_1765at 379.559 kb on + strandat 379.560 kb on - strandat 379.605 kb on + strandat 379.605 kb on + strandat 379.605 kb on + strandat 379.605 kb on + strandat 379.605 kb on + strandat 379.605 kb on + strandat 379.605 kb on + strandat 379.605 kb on + strandat 379.606 kb on - strandat 379.606 kb on - strandat 379.606 kb on - strandat 379.606 kb on - strandat 379.606 kb on - strandat 379.606 kb on - strandat 379.734 kb on + strandat 379.736 kb on + strandat 379.736 kb on + strandat 379.750 kb on + strandat 379.750 kb on + strandat 379.750 kb on + strandat 379.751 kb on - strandat 379.751 kb on - strandat 379.751 kb on - strandat 379.751 kb on - strandat 379.751 kb on - strandat 379.980 kb on + strandat 380.052 kb on + strand, within Ac3H11_1766at 380.052 kb on + strand, within Ac3H11_1766at 380.053 kb on - strand, within Ac3H11_1766at 380.053 kb on - strand, within Ac3H11_1766at 380.154 kb on + strand, within Ac3H11_1766at 380.154 kb on + strand, within Ac3H11_1766at 380.155 kb on - strand, within Ac3H11_1766at 380.155 kb on - strand, within Ac3H11_1766at 380.155 kb on - strand, within Ac3H11_1766at 380.463 kb on + strand, within Ac3H11_1766at 380.463 kb on + strand, within Ac3H11_1766at 380.463 kb on + strand, within Ac3H11_1766at 380.464 kb on - strand, within Ac3H11_1766at 380.464 kb on - strand, within Ac3H11_1766at 380.550 kb on + strand, within Ac3H11_1766at 380.550 kb on + strand, within Ac3H11_1766at 380.551 kb on - strand, within Ac3H11_1766

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0025 mg/ml
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377,559 + Ac3H11_1764 0.13 +1.2
377,559 + Ac3H11_1764 0.13 +1.3
377,559 + Ac3H11_1764 0.13 -0.8
377,560 - Ac3H11_1764 0.13 -0.6
377,560 - Ac3H11_1764 0.13 -3.3
377,560 - Ac3H11_1764 0.13 -2.3
377,560 - Ac3H11_1764 0.13 -1.8
377,562 + Ac3H11_1764 0.13 +0.3
377,562 + Ac3H11_1764 0.13 +0.1
377,562 + Ac3H11_1764 0.13 -0.5
377,563 - Ac3H11_1764 0.14 -1.1
377,563 - Ac3H11_1764 0.14 -2.0
377,787 + Ac3H11_1764 0.33 -1.4
377,787 + Ac3H11_1764 0.33 +1.0
377,787 + Ac3H11_1764 0.33 +1.3
377,787 + Ac3H11_1764 0.33 +1.0
377,787 + Ac3H11_1764 0.33 -0.6
377,787 + Ac3H11_1764 0.33 +0.4
377,788 - Ac3H11_1764 0.33 -0.8
377,788 - Ac3H11_1764 0.33 +1.1
377,788 - Ac3H11_1764 0.33 -0.3
377,788 - -0.1
378,183 + Ac3H11_1764 0.68 -2.4
378,184 - Ac3H11_1764 0.68 +0.2
378,204 + Ac3H11_1764 0.69 -2.8
378,273 + Ac3H11_1764 0.75 -2.6
378,273 + Ac3H11_1764 0.75 -1.7
378,396 + Ac3H11_1764 0.86 -0.2
378,397 - Ac3H11_1764 0.86 +0.7
378,397 - Ac3H11_1764 0.86 -2.9
378,397 - Ac3H11_1764 0.86 -1.2
378,749 + Ac3H11_1765 0.19 +0.8
378,749 + Ac3H11_1765 0.19 -2.9
378,749 + Ac3H11_1765 0.19 +0.4
378,750 - Ac3H11_1765 0.19 +1.6
378,750 - Ac3H11_1765 0.19 +0.2
378,800 + Ac3H11_1765 0.23 +1.1
378,800 + Ac3H11_1765 0.23 +1.7
378,800 + Ac3H11_1765 0.23 +1.5
378,800 + Ac3H11_1765 0.23 +0.3
378,800 + Ac3H11_1765 0.23 +0.2
378,800 + Ac3H11_1765 0.23 -0.8
378,800 + Ac3H11_1765 0.23 -1.1
378,800 + Ac3H11_1765 0.23 -1.3
378,800 + Ac3H11_1765 0.23 +1.4
378,800 + Ac3H11_1765 0.23 -0.9
378,801 - Ac3H11_1765 0.24 -0.6
378,801 - Ac3H11_1765 0.24 -2.6
378,801 - Ac3H11_1765 0.24 -2.0
378,801 - Ac3H11_1765 0.24 -0.5
378,801 - Ac3H11_1765 0.24 -0.5
379,068 - Ac3H11_1765 0.49 -0.2
379,313 + Ac3H11_1765 0.72 +0.0
379,313 + Ac3H11_1765 0.72 -3.0
379,313 + Ac3H11_1765 0.72 -1.3
379,314 - Ac3H11_1765 0.72 +0.5
379,314 - Ac3H11_1765 0.72 +0.2
379,314 - Ac3H11_1765 0.72 +0.5
379,314 - Ac3H11_1765 0.72 +1.3
379,314 - Ac3H11_1765 0.72 -2.2
379,427 + Ac3H11_1765 0.83 +0.5
379,428 - Ac3H11_1765 0.83 +1.5
379,428 - Ac3H11_1765 0.83 -3.2
379,428 - Ac3H11_1765 0.83 +0.7
379,559 + +2.2
379,560 - -1.3
379,605 + +0.1
379,605 + +1.0
379,605 + -0.5
379,605 + +0.9
379,605 + -0.6
379,605 + -2.1
379,605 + +1.4
379,605 + -3.3
379,606 - -1.2
379,606 - +3.4
379,606 - -1.1
379,606 - -2.0
379,606 - -1.1
379,606 - +1.2
379,734 + +0.2
379,736 + -2.3
379,736 + +1.3
379,750 + +0.3
379,750 + +2.1
379,750 + -1.9
379,751 - +1.5
379,751 - +0.0
379,751 - +2.3
379,751 - +0.7
379,751 - +1.1
379,980 + +1.3
380,052 + Ac3H11_1766 0.12 -3.9
380,052 + Ac3H11_1766 0.12 -1.8
380,053 - Ac3H11_1766 0.12 -4.1
380,053 - Ac3H11_1766 0.12 +1.9
380,154 + Ac3H11_1766 0.21 +1.6
380,154 + Ac3H11_1766 0.21 -0.2
380,155 - Ac3H11_1766 0.21 -0.0
380,155 - Ac3H11_1766 0.21 -0.2
380,155 - Ac3H11_1766 0.21 -0.6
380,463 + Ac3H11_1766 0.48 -2.2
380,463 + Ac3H11_1766 0.48 -1.8
380,463 + Ac3H11_1766 0.48 -0.2
380,464 - Ac3H11_1766 0.48 +2.4
380,464 - Ac3H11_1766 0.48 -0.9
380,550 + Ac3H11_1766 0.56 -0.0
380,550 + Ac3H11_1766 0.56 +0.1
380,551 - Ac3H11_1766 0.56 -1.6

Or see this region's nucleotide sequence