Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1382

Experiment: Cisplatin 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1380 and Ac3H11_1381 are separated by 77 nucleotidesAc3H11_1381 and Ac3H11_1382 are separated by 27 nucleotidesAc3H11_1382 and Ac3H11_1383 overlap by 8 nucleotides Ac3H11_1380 - hypothetical protein, at 68,708 to 69,082 _1380 Ac3H11_1381 - RNA polymerase sigma factor for flagellar operon, at 69,160 to 69,876 _1381 Ac3H11_1382 - FIG00538194: hypothetical protein, at 69,904 to 70,701 _1382 Ac3H11_1383 - Flagellar biosynthesis protein FlhF, at 70,694 to 72,217 _1383 Position (kb) 69 70 71Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 69.014 kb on + strand, within Ac3H11_1380at 69.015 kb on - strand, within Ac3H11_1380at 69.015 kb on - strand, within Ac3H11_1380at 69.015 kb on - strand, within Ac3H11_1380at 69.015 kb on - strand, within Ac3H11_1380at 69.065 kb on + strandat 69.065 kb on + strandat 69.065 kb on + strandat 69.066 kb on - strandat 69.133 kb on + strandat 69.134 kb on - strandat 69.149 kb on + strandat 69.150 kb on - strandat 69.150 kb on - strandat 69.278 kb on + strand, within Ac3H11_1381at 69.278 kb on + strand, within Ac3H11_1381at 69.278 kb on + strand, within Ac3H11_1381at 69.278 kb on + strand, within Ac3H11_1381at 69.278 kb on + strand, within Ac3H11_1381at 69.279 kb on - strand, within Ac3H11_1381at 69.279 kb on - strand, within Ac3H11_1381at 69.279 kb on - strand, within Ac3H11_1381at 69.281 kb on + strand, within Ac3H11_1381at 69.281 kb on + strandat 69.281 kb on + strand, within Ac3H11_1381at 69.281 kb on + strand, within Ac3H11_1381at 69.281 kb on + strand, within Ac3H11_1381at 69.281 kb on + strand, within Ac3H11_1381at 69.281 kb on + strand, within Ac3H11_1381at 69.281 kb on + strand, within Ac3H11_1381at 69.281 kb on + strand, within Ac3H11_1381at 69.281 kb on + strand, within Ac3H11_1381at 69.282 kb on - strand, within Ac3H11_1381at 69.282 kb on - strand, within Ac3H11_1381at 69.282 kb on - strand, within Ac3H11_1381at 69.282 kb on - strand, within Ac3H11_1381at 69.282 kb on - strand, within Ac3H11_1381at 69.282 kb on - strand, within Ac3H11_1381at 69.452 kb on + strand, within Ac3H11_1381at 69.452 kb on + strand, within Ac3H11_1381at 69.452 kb on + strand, within Ac3H11_1381at 69.453 kb on - strand, within Ac3H11_1381at 69.453 kb on - strand, within Ac3H11_1381at 69.872 kb on + strandat 69.872 kb on + strandat 69.872 kb on + strandat 69.872 kb on + strandat 69.873 kb on - strandat 69.873 kb on - strandat 69.873 kb on - strandat 70.208 kb on + strand, within Ac3H11_1382at 70.208 kb on + strand, within Ac3H11_1382at 70.208 kb on + strand, within Ac3H11_1382at 70.209 kb on - strand, within Ac3H11_1382at 70.209 kb on - strand, within Ac3H11_1382at 70.209 kb on - strand, within Ac3H11_1382at 70.209 kb on - strand, within Ac3H11_1382at 70.322 kb on + strand, within Ac3H11_1382at 70.322 kb on + strand, within Ac3H11_1382at 70.322 kb on + strand, within Ac3H11_1382at 70.323 kb on - strand, within Ac3H11_1382at 70.323 kb on - strand, within Ac3H11_1382at 70.334 kb on + strand, within Ac3H11_1382at 70.551 kb on - strand, within Ac3H11_1382at 71.211 kb on + strand, within Ac3H11_1383at 71.212 kb on - strand, within Ac3H11_1383at 71.212 kb on - strand, within Ac3H11_1383at 71.244 kb on + strand, within Ac3H11_1383at 71.245 kb on - strand, within Ac3H11_1383at 71.245 kb on - strand, within Ac3H11_1383at 71.376 kb on + strand, within Ac3H11_1383at 71.376 kb on + strand, within Ac3H11_1383at 71.377 kb on - strand, within Ac3H11_1383at 71.377 kb on - strand, within Ac3H11_1383at 71.505 kb on + strand, within Ac3H11_1383

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0025 mg/ml
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69,014 + Ac3H11_1380 0.82 -2.4
69,015 - Ac3H11_1380 0.82 -0.3
69,015 - Ac3H11_1380 0.82 +1.3
69,015 - Ac3H11_1380 0.82 -3.7
69,015 - Ac3H11_1380 0.82 -0.7
69,065 + +0.8
69,065 + -2.2
69,065 + -1.3
69,066 - -1.5
69,133 + -3.0
69,134 - -0.0
69,149 + -0.1
69,150 - -0.9
69,150 - -0.9
69,278 + Ac3H11_1381 0.16 -1.8
69,278 + Ac3H11_1381 0.16 +1.7
69,278 + Ac3H11_1381 0.16 +1.5
69,278 + Ac3H11_1381 0.16 -0.3
69,278 + Ac3H11_1381 0.16 -3.1
69,279 - Ac3H11_1381 0.17 +2.6
69,279 - Ac3H11_1381 0.17 +0.6
69,279 - Ac3H11_1381 0.17 +2.5
69,281 + Ac3H11_1381 0.17 -0.5
69,281 + +1.6
69,281 + Ac3H11_1381 0.17 -1.2
69,281 + Ac3H11_1381 0.17 -2.5
69,281 + Ac3H11_1381 0.17 -0.1
69,281 + Ac3H11_1381 0.17 +2.1
69,281 + Ac3H11_1381 0.17 -1.0
69,281 + Ac3H11_1381 0.17 +2.3
69,281 + Ac3H11_1381 0.17 -0.5
69,281 + Ac3H11_1381 0.17 +0.6
69,282 - Ac3H11_1381 0.17 -3.5
69,282 - Ac3H11_1381 0.17 +0.5
69,282 - Ac3H11_1381 0.17 +1.9
69,282 - Ac3H11_1381 0.17 -1.5
69,282 - Ac3H11_1381 0.17 -0.9
69,282 - Ac3H11_1381 0.17 -0.2
69,452 + Ac3H11_1381 0.41 -0.2
69,452 + Ac3H11_1381 0.41 -0.4
69,452 + Ac3H11_1381 0.41 +0.4
69,453 - Ac3H11_1381 0.41 +1.1
69,453 - Ac3H11_1381 0.41 +1.7
69,872 + -0.7
69,872 + -0.1
69,872 + +1.1
69,872 + -0.6
69,873 - -2.2
69,873 - +0.0
69,873 - -2.5
70,208 + Ac3H11_1382 0.38 -1.3
70,208 + Ac3H11_1382 0.38 +0.5
70,208 + Ac3H11_1382 0.38 +0.8
70,209 - Ac3H11_1382 0.38 -1.3
70,209 - Ac3H11_1382 0.38 +0.8
70,209 - Ac3H11_1382 0.38 +1.8
70,209 - Ac3H11_1382 0.38 -2.3
70,322 + Ac3H11_1382 0.52 -0.1
70,322 + Ac3H11_1382 0.52 -0.5
70,322 + Ac3H11_1382 0.52 -2.8
70,323 - Ac3H11_1382 0.53 -0.3
70,323 - Ac3H11_1382 0.53 -0.3
70,334 + Ac3H11_1382 0.54 +0.6
70,551 - Ac3H11_1382 0.81 -2.9
71,211 + Ac3H11_1383 0.34 +1.1
71,212 - Ac3H11_1383 0.34 +2.0
71,212 - Ac3H11_1383 0.34 -2.9
71,244 + Ac3H11_1383 0.36 -2.5
71,245 - Ac3H11_1383 0.36 -1.2
71,245 - Ac3H11_1383 0.36 +0.4
71,376 + Ac3H11_1383 0.45 -1.1
71,376 + Ac3H11_1383 0.45 +1.1
71,377 - Ac3H11_1383 0.45 +1.8
71,377 - Ac3H11_1383 0.45 -1.6
71,505 + Ac3H11_1383 0.53 +1.6

Or see this region's nucleotide sequence