Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1264

Experiment: Cisplatin 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1262 and Ac3H11_1263 are separated by 148 nucleotidesAc3H11_1263 and Ac3H11_1264 are separated by 80 nucleotidesAc3H11_1264 and Ac3H11_1265 are separated by 186 nucleotidesAc3H11_1265 and Ac3H11_1266 are separated by 27 nucleotides Ac3H11_1262 - probable two-component system response regulator, at 81,362 to 82,018 _1262 Ac3H11_1263 - Response regulator receiver:Transcriptional regulatory protein, C- terminal, at 82,167 to 82,841 _1263 Ac3H11_1264 - Sensor protein basS/pmrB (EC 2.7.3.-), at 82,922 to 84,373 _1264 Ac3H11_1265 - FIG00931207: hypothetical protein, at 84,560 to 85,276 _1265 Ac3H11_1266 - Biotin--protein ligase (EC 6.3.4.9, EC 6.3.4.10, EC 6.3.4.11, EC 6.3.4.15), at 85,304 to 86,158 _1266 Position (kb) 82 83 84 85Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 82.093 kb on + strandat 82.094 kb on - strandat 82.461 kb on + strand, within Ac3H11_1263at 82.461 kb on + strand, within Ac3H11_1263at 82.461 kb on + strand, within Ac3H11_1263at 82.461 kb on + strand, within Ac3H11_1263at 82.461 kb on + strand, within Ac3H11_1263at 82.461 kb on + strand, within Ac3H11_1263at 82.461 kb on + strand, within Ac3H11_1263at 82.461 kb on + strand, within Ac3H11_1263at 82.461 kb on + strand, within Ac3H11_1263at 82.461 kb on + strand, within Ac3H11_1263at 82.462 kb on - strand, within Ac3H11_1263at 82.569 kb on + strand, within Ac3H11_1263at 82.569 kb on + strand, within Ac3H11_1263at 82.569 kb on + strand, within Ac3H11_1263at 82.570 kb on - strand, within Ac3H11_1263at 82.570 kb on - strand, within Ac3H11_1263at 82.746 kb on + strand, within Ac3H11_1263at 82.746 kb on + strand, within Ac3H11_1263at 82.746 kb on + strand, within Ac3H11_1263at 82.746 kb on + strand, within Ac3H11_1263at 82.746 kb on + strand, within Ac3H11_1263at 82.746 kb on + strand, within Ac3H11_1263at 82.746 kb on + strand, within Ac3H11_1263at 82.746 kb on + strand, within Ac3H11_1263at 82.746 kb on + strand, within Ac3H11_1263at 82.746 kb on + strand, within Ac3H11_1263at 82.747 kb on - strand, within Ac3H11_1263at 82.747 kb on - strand, within Ac3H11_1263at 82.747 kb on - strand, within Ac3H11_1263at 82.747 kb on - strand, within Ac3H11_1263at 82.747 kb on - strand, within Ac3H11_1263at 82.747 kb on - strand, within Ac3H11_1263at 82.747 kb on - strand, within Ac3H11_1263at 82.747 kb on - strand, within Ac3H11_1263at 82.747 kb on - strand, within Ac3H11_1263at 82.842 kb on + strandat 82.842 kb on + strandat 82.843 kb on - strandat 82.843 kb on - strandat 82.857 kb on + strandat 82.858 kb on - strandat 82.858 kb on - strandat 83.075 kb on + strand, within Ac3H11_1264at 83.075 kb on + strand, within Ac3H11_1264at 83.076 kb on - strand, within Ac3H11_1264at 83.076 kb on - strand, within Ac3H11_1264at 83.076 kb on - strand, within Ac3H11_1264at 83.186 kb on + strand, within Ac3H11_1264at 83.186 kb on + strand, within Ac3H11_1264at 83.186 kb on + strand, within Ac3H11_1264at 83.187 kb on - strand, within Ac3H11_1264at 83.189 kb on + strand, within Ac3H11_1264at 83.190 kb on - strand, within Ac3H11_1264at 83.190 kb on - strand, within Ac3H11_1264at 83.190 kb on - strand, within Ac3H11_1264at 83.190 kb on - strand, within Ac3H11_1264at 83.190 kb on - strand, within Ac3H11_1264at 83.190 kb on - strand, within Ac3H11_1264at 83.190 kb on - strand, within Ac3H11_1264at 83.190 kb on - strand, within Ac3H11_1264at 83.327 kb on + strand, within Ac3H11_1264at 83.327 kb on + strand, within Ac3H11_1264at 83.327 kb on + strand, within Ac3H11_1264at 83.327 kb on + strand, within Ac3H11_1264at 83.327 kb on + strand, within Ac3H11_1264at 83.327 kb on + strand, within Ac3H11_1264at 83.328 kb on - strand, within Ac3H11_1264at 83.328 kb on - strand, within Ac3H11_1264at 83.954 kb on + strand, within Ac3H11_1264at 83.954 kb on + strand, within Ac3H11_1264at 84.053 kb on + strand, within Ac3H11_1264at 84.053 kb on + strand, within Ac3H11_1264at 84.053 kb on + strand, within Ac3H11_1264at 84.053 kb on + strand, within Ac3H11_1264at 84.053 kb on + strand, within Ac3H11_1264at 84.054 kb on - strand, within Ac3H11_1264at 84.054 kb on - strand, within Ac3H11_1264at 84.054 kb on - strand, within Ac3H11_1264at 84.054 kb on - strand, within Ac3H11_1264at 84.054 kb on - strand, within Ac3H11_1264at 84.054 kb on - strand, within Ac3H11_1264at 84.054 kb on - strand, within Ac3H11_1264at 84.054 kb on - strand, within Ac3H11_1264at 84.054 kb on - strand, within Ac3H11_1264at 84.054 kb on - strand, within Ac3H11_1264at 84.133 kb on - strand, within Ac3H11_1264at 84.133 kb on - strand, within Ac3H11_1264at 84.133 kb on - strand, within Ac3H11_1264at 84.133 kb on - strand, within Ac3H11_1264at 84.133 kb on - strand, within Ac3H11_1264at 84.372 kb on - strandat 84.876 kb on + strand, within Ac3H11_1265at 84.876 kb on + strand, within Ac3H11_1265at 84.877 kb on - strand, within Ac3H11_1265at 84.877 kb on - strand, within Ac3H11_1265at 84.877 kb on - strand, within Ac3H11_1265at 84.877 kb on - strand, within Ac3H11_1265at 84.877 kb on - strand, within Ac3H11_1265at 85.231 kb on - strandat 85.305 kb on + strandat 85.305 kb on + strandat 85.306 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0025 mg/ml
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82,093 + +2.5
82,094 - -0.1
82,461 + Ac3H11_1263 0.44 -0.2
82,461 + Ac3H11_1263 0.44 -1.8
82,461 + Ac3H11_1263 0.44 -0.2
82,461 + Ac3H11_1263 0.44 -2.9
82,461 + Ac3H11_1263 0.44 +1.1
82,461 + Ac3H11_1263 0.44 +1.0
82,461 + Ac3H11_1263 0.44 +1.8
82,461 + Ac3H11_1263 0.44 +0.8
82,461 + Ac3H11_1263 0.44 -0.9
82,461 + Ac3H11_1263 0.44 +1.0
82,462 - Ac3H11_1263 0.44 +2.0
82,569 + Ac3H11_1263 0.60 +0.8
82,569 + Ac3H11_1263 0.60 +0.6
82,569 + Ac3H11_1263 0.60 +1.4
82,570 - Ac3H11_1263 0.60 +0.5
82,570 - Ac3H11_1263 0.60 +2.5
82,746 + Ac3H11_1263 0.86 +1.7
82,746 + Ac3H11_1263 0.86 +0.0
82,746 + Ac3H11_1263 0.86 +0.1
82,746 + Ac3H11_1263 0.86 -1.2
82,746 + Ac3H11_1263 0.86 -2.0
82,746 + Ac3H11_1263 0.86 -1.5
82,746 + Ac3H11_1263 0.86 +2.3
82,746 + Ac3H11_1263 0.86 -0.2
82,746 + Ac3H11_1263 0.86 +2.7
82,746 + Ac3H11_1263 0.86 -1.1
82,747 - Ac3H11_1263 0.86 +0.2
82,747 - Ac3H11_1263 0.86 -2.0
82,747 - Ac3H11_1263 0.86 +1.9
82,747 - Ac3H11_1263 0.86 +1.3
82,747 - Ac3H11_1263 0.86 +0.7
82,747 - Ac3H11_1263 0.86 +0.0
82,747 - Ac3H11_1263 0.86 +0.8
82,747 - Ac3H11_1263 0.86 -0.6
82,747 - Ac3H11_1263 0.86 +0.7
82,842 + +0.1
82,842 + -2.7
82,843 - -0.4
82,843 - +1.9
82,857 + -0.6
82,858 - +0.5
82,858 - -2.7
83,075 + Ac3H11_1264 0.11 -1.9
83,075 + Ac3H11_1264 0.11 -1.9
83,076 - Ac3H11_1264 0.11 +0.6
83,076 - Ac3H11_1264 0.11 -1.3
83,076 - Ac3H11_1264 0.11 -0.2
83,186 + Ac3H11_1264 0.18 +1.3
83,186 + Ac3H11_1264 0.18 -2.0
83,186 + Ac3H11_1264 0.18 -0.5
83,187 - Ac3H11_1264 0.18 -0.7
83,189 + Ac3H11_1264 0.18 -0.2
83,190 - Ac3H11_1264 0.18 -0.2
83,190 - Ac3H11_1264 0.18 -1.3
83,190 - Ac3H11_1264 0.18 +3.9
83,190 - Ac3H11_1264 0.18 -1.3
83,190 - Ac3H11_1264 0.18 -1.1
83,190 - Ac3H11_1264 0.18 -3.5
83,190 - Ac3H11_1264 0.18 +1.7
83,190 - Ac3H11_1264 0.18 -0.1
83,327 + Ac3H11_1264 0.28 -0.9
83,327 + Ac3H11_1264 0.28 +1.8
83,327 + Ac3H11_1264 0.28 +1.2
83,327 + Ac3H11_1264 0.28 +2.1
83,327 + Ac3H11_1264 0.28 -0.4
83,327 + Ac3H11_1264 0.28 -1.9
83,328 - Ac3H11_1264 0.28 +1.0
83,328 - Ac3H11_1264 0.28 -2.7
83,954 + Ac3H11_1264 0.71 +1.2
83,954 + Ac3H11_1264 0.71 +1.9
84,053 + Ac3H11_1264 0.78 -0.5
84,053 + Ac3H11_1264 0.78 +2.4
84,053 + Ac3H11_1264 0.78 -1.4
84,053 + Ac3H11_1264 0.78 +1.8
84,053 + Ac3H11_1264 0.78 +0.8
84,054 - Ac3H11_1264 0.78 -1.0
84,054 - Ac3H11_1264 0.78 +0.8
84,054 - Ac3H11_1264 0.78 +0.1
84,054 - Ac3H11_1264 0.78 -0.7
84,054 - Ac3H11_1264 0.78 +1.3
84,054 - Ac3H11_1264 0.78 +0.3
84,054 - Ac3H11_1264 0.78 -1.7
84,054 - Ac3H11_1264 0.78 -1.7
84,054 - Ac3H11_1264 0.78 +0.4
84,054 - Ac3H11_1264 0.78 -1.7
84,133 - Ac3H11_1264 0.83 -1.0
84,133 - Ac3H11_1264 0.83 +2.8
84,133 - Ac3H11_1264 0.83 +1.2
84,133 - Ac3H11_1264 0.83 -0.2
84,133 - Ac3H11_1264 0.83 +0.3
84,372 - +0.1
84,876 + Ac3H11_1265 0.44 +0.6
84,876 + Ac3H11_1265 0.44 -0.3
84,877 - Ac3H11_1265 0.44 -1.0
84,877 - Ac3H11_1265 0.44 +1.6
84,877 - Ac3H11_1265 0.44 +1.0
84,877 - Ac3H11_1265 0.44 -2.3
84,877 - Ac3H11_1265 0.44 -0.5
85,231 - +1.3
85,305 + -0.1
85,305 + -3.8
85,306 - +0.0

Or see this region's nucleotide sequence