Experiment: Cisplatin 0.0025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1002 and Ac3H11_1003 are separated by 136 nucleotides Ac3H11_1003 and Ac3H11_1004 are separated by 305 nucleotides
Ac3H11_1002 - ABC transporter ATP-binding protein, at 126,016 to 127,086
_1002
Ac3H11_1003 - ABC transporter substrate-binding protein, at 127,223 to 128,461
_1003
Ac3H11_1004 - ABC transporter permease protein, at 128,767 to 129,681
_1004
Position (kb) 127
128
129 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 126.709 kb on + strand, within Ac3H11_1002 at 126.710 kb on - strand, within Ac3H11_1002 at 126.756 kb on + strand, within Ac3H11_1002 at 126.756 kb on + strand, within Ac3H11_1002 at 126.881 kb on - strand, within Ac3H11_1002 at 126.881 kb on - strand, within Ac3H11_1002 at 126.881 kb on - strand, within Ac3H11_1002 at 126.892 kb on + strand, within Ac3H11_1002 at 126.892 kb on + strand, within Ac3H11_1002 at 126.893 kb on - strand, within Ac3H11_1002 at 126.893 kb on - strand, within Ac3H11_1002 at 126.893 kb on - strand, within Ac3H11_1002 at 126.893 kb on - strand, within Ac3H11_1002 at 126.893 kb on - strand, within Ac3H11_1002 at 126.952 kb on + strand, within Ac3H11_1002 at 127.391 kb on + strand, within Ac3H11_1003 at 127.391 kb on + strand, within Ac3H11_1003 at 127.391 kb on + strand, within Ac3H11_1003 at 127.392 kb on - strand, within Ac3H11_1003 at 127.392 kb on - strand, within Ac3H11_1003 at 127.392 kb on - strand, within Ac3H11_1003 at 127.469 kb on + strand, within Ac3H11_1003 at 127.469 kb on + strand, within Ac3H11_1003 at 127.469 kb on + strand, within Ac3H11_1003 at 127.470 kb on - strand, within Ac3H11_1003 at 127.625 kb on + strand, within Ac3H11_1003 at 127.625 kb on + strand, within Ac3H11_1003 at 127.626 kb on - strand, within Ac3H11_1003 at 127.697 kb on + strand, within Ac3H11_1003 at 127.808 kb on - strand, within Ac3H11_1003 at 127.859 kb on + strand, within Ac3H11_1003 at 127.859 kb on + strand, within Ac3H11_1003 at 127.859 kb on + strand, within Ac3H11_1003 at 127.859 kb on + strand, within Ac3H11_1003 at 127.859 kb on + strand, within Ac3H11_1003 at 127.859 kb on + strand, within Ac3H11_1003 at 127.860 kb on - strand, within Ac3H11_1003 at 127.860 kb on - strand, within Ac3H11_1003 at 127.860 kb on - strand, within Ac3H11_1003 at 127.860 kb on - strand, within Ac3H11_1003 at 127.865 kb on + strand, within Ac3H11_1003 at 127.865 kb on + strand, within Ac3H11_1003 at 128.090 kb on + strand, within Ac3H11_1003 at 128.156 kb on + strand, within Ac3H11_1003 at 128.157 kb on - strand, within Ac3H11_1003 at 128.157 kb on - strand, within Ac3H11_1003 at 128.198 kb on + strand, within Ac3H11_1003 at 128.199 kb on - strand, within Ac3H11_1003 at 128.199 kb on - strand, within Ac3H11_1003 at 128.219 kb on + strand, within Ac3H11_1003 at 128.220 kb on - strand, within Ac3H11_1003 at 128.220 kb on - strand, within Ac3H11_1003 at 128.273 kb on + strand, within Ac3H11_1003 at 128.366 kb on + strand at 128.423 kb on + strand at 128.423 kb on + strand at 128.423 kb on + strand at 128.423 kb on + strand at 128.423 kb on + strand at 128.424 kb on - strand at 128.424 kb on - strand at 128.424 kb on - strand at 128.424 kb on - strand at 128.424 kb on - strand at 128.424 kb on - strand at 128.424 kb on - strand at 128.424 kb on - strand at 128.424 kb on - strand at 128.424 kb on - strand at 128.424 kb on - strand at 128.424 kb on - strand at 128.927 kb on - strand, within Ac3H11_1004 at 128.959 kb on + strand, within Ac3H11_1004 at 128.959 kb on + strand, within Ac3H11_1004 at 128.959 kb on + strand, within Ac3H11_1004 at 128.959 kb on + strand, within Ac3H11_1004 at 128.960 kb on - strand, within Ac3H11_1004 at 128.960 kb on - strand, within Ac3H11_1004 at 129.022 kb on + strand, within Ac3H11_1004 at 129.022 kb on + strand, within Ac3H11_1004 at 129.023 kb on - strand, within Ac3H11_1004 at 129.023 kb on - strand, within Ac3H11_1004 at 129.023 kb on - strand, within Ac3H11_1004 at 129.025 kb on + strand, within Ac3H11_1004 at 129.025 kb on + strand, within Ac3H11_1004 at 129.026 kb on - strand, within Ac3H11_1004 at 129.026 kb on - strand, within Ac3H11_1004 at 129.319 kb on + strand, within Ac3H11_1004 at 129.319 kb on + strand, within Ac3H11_1004
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0025 mg/ml remove 126,709 + Ac3H11_1002 0.65 -2.5 126,710 - Ac3H11_1002 0.65 +0.9 126,756 + Ac3H11_1002 0.69 -2.3 126,756 + Ac3H11_1002 0.69 -1.0 126,881 - Ac3H11_1002 0.81 -0.8 126,881 - Ac3H11_1002 0.81 -1.9 126,881 - Ac3H11_1002 0.81 -0.4 126,892 + Ac3H11_1002 0.82 +1.1 126,892 + Ac3H11_1002 0.82 +1.2 126,893 - Ac3H11_1002 0.82 +0.5 126,893 - Ac3H11_1002 0.82 -0.7 126,893 - Ac3H11_1002 0.82 -1.0 126,893 - Ac3H11_1002 0.82 -0.6 126,893 - Ac3H11_1002 0.82 +0.6 126,952 + Ac3H11_1002 0.87 -1.0 127,391 + Ac3H11_1003 0.14 -2.4 127,391 + Ac3H11_1003 0.14 +1.7 127,391 + Ac3H11_1003 0.14 -2.1 127,392 - Ac3H11_1003 0.14 +0.8 127,392 - Ac3H11_1003 0.14 +2.2 127,392 - Ac3H11_1003 0.14 -1.4 127,469 + Ac3H11_1003 0.20 +1.9 127,469 + Ac3H11_1003 0.20 +0.6 127,469 + Ac3H11_1003 0.20 -1.8 127,470 - Ac3H11_1003 0.20 -0.3 127,625 + Ac3H11_1003 0.32 +0.3 127,625 + Ac3H11_1003 0.32 +0.1 127,626 - Ac3H11_1003 0.33 -2.0 127,697 + Ac3H11_1003 0.38 +1.0 127,808 - Ac3H11_1003 0.47 -0.4 127,859 + Ac3H11_1003 0.51 -0.8 127,859 + Ac3H11_1003 0.51 +1.4 127,859 + Ac3H11_1003 0.51 -0.2 127,859 + Ac3H11_1003 0.51 -2.3 127,859 + Ac3H11_1003 0.51 -1.3 127,859 + Ac3H11_1003 0.51 -0.4 127,860 - Ac3H11_1003 0.51 -2.6 127,860 - Ac3H11_1003 0.51 +0.3 127,860 - Ac3H11_1003 0.51 +1.6 127,860 - Ac3H11_1003 0.51 -0.6 127,865 + Ac3H11_1003 0.52 -0.7 127,865 + Ac3H11_1003 0.52 +1.0 128,090 + Ac3H11_1003 0.70 -0.1 128,156 + Ac3H11_1003 0.75 -0.0 128,157 - Ac3H11_1003 0.75 +0.8 128,157 - Ac3H11_1003 0.75 +0.2 128,198 + Ac3H11_1003 0.79 -0.5 128,199 - Ac3H11_1003 0.79 -1.3 128,199 - Ac3H11_1003 0.79 -0.4 128,219 + Ac3H11_1003 0.80 -1.0 128,220 - Ac3H11_1003 0.80 +0.9 128,220 - Ac3H11_1003 0.80 -2.8 128,273 + Ac3H11_1003 0.85 +1.9 128,366 + +0.8 128,423 + +1.5 128,423 + -2.3 128,423 + -3.0 128,423 + -0.3 128,423 + -1.3 128,424 - +1.3 128,424 - +0.0 128,424 - +0.5 128,424 - +0.3 128,424 - +0.1 128,424 - -2.5 128,424 - +0.1 128,424 - +0.9 128,424 - -0.0 128,424 - +1.0 128,424 - +0.9 128,424 - -0.6 128,927 - Ac3H11_1004 0.17 +1.1 128,959 + Ac3H11_1004 0.21 +0.7 128,959 + Ac3H11_1004 0.21 -2.8 128,959 + Ac3H11_1004 0.21 +1.0 128,959 + Ac3H11_1004 0.21 +0.2 128,960 - Ac3H11_1004 0.21 +0.5 128,960 - Ac3H11_1004 0.21 -2.2 129,022 + Ac3H11_1004 0.28 -0.1 129,022 + Ac3H11_1004 0.28 +1.0 129,023 - Ac3H11_1004 0.28 +0.8 129,023 - Ac3H11_1004 0.28 +2.2 129,023 - Ac3H11_1004 0.28 +0.3 129,025 + Ac3H11_1004 0.28 +1.6 129,025 + Ac3H11_1004 0.28 +0.4 129,026 - Ac3H11_1004 0.28 -0.4 129,026 - Ac3H11_1004 0.28 +1.6 129,319 + Ac3H11_1004 0.60 +1.2 129,319 + Ac3H11_1004 0.60 -3.0
Or see this region's nucleotide sequence