Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS18895

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS18890 and AZOBR_RS18895 are separated by 25 nucleotidesAZOBR_RS18895 and AZOBR_RS18900 are separated by 1 nucleotides AZOBR_RS18890: AZOBR_RS18890 - aspartate kinase, at 1,007,819 to 1,009,054 _RS18890 AZOBR_RS18895: AZOBR_RS18895 - 2-nitropropane dioxygenase, at 1,009,080 to 1,010,186 _RS18895 AZOBR_RS18900: AZOBR_RS18900 - peptidase, at 1,010,188 to 1,012,488 _RS18900 Position (kb) 1009 1010 1011Strain fitness (log2 ratio) -3 -2 -1 0 1at 1010.365 kb on + strandat 1010.644 kb on + strand, within AZOBR_RS18900at 1011.122 kb on - strand, within AZOBR_RS18900at 1011.122 kb on - strand, within AZOBR_RS18900at 1011.122 kb on - strand, within AZOBR_RS18900

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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1,010,365 + -1.3
1,010,644 + AZOBR_RS18900 0.20 -3.4
1,011,122 - AZOBR_RS18900 0.41 -2.7
1,011,122 - AZOBR_RS18900 0.41 -0.9
1,011,122 - AZOBR_RS18900 0.41 -2.3

Or see this region's nucleotide sequence