Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS08075 and AZOBR_RS08080 overlap by 4 nucleotides AZOBR_RS08080 and AZOBR_RS08085 are separated by 49 nucleotides AZOBR_RS08085 and AZOBR_RS08090 overlap by 4 nucleotides AZOBR_RS08090 and AZOBR_RS08095 are separated by 100 nucleotides
AZOBR_RS08075: AZOBR_RS08075 - glutamate racemase, at 1,703,674 to 1,704,525
_RS08075
AZOBR_RS08080: AZOBR_RS08080 - urease accessory protein UreE, at 1,704,522 to 1,705,103
_RS08080
AZOBR_RS08085: AZOBR_RS08085 - urease accessory protein UreF, at 1,705,153 to 1,705,902
_RS08085
AZOBR_RS08090: AZOBR_RS08090 - urease accessory protein UreG, at 1,705,899 to 1,706,537
_RS08090
AZOBR_RS08095: AZOBR_RS08095 - hypothetical protein, at 1,706,638 to 1,707,510
_RS08095
Position (kb) 1705
1706 Strain fitness (log2 ratio) -2
-1
0
1 at 1704.214 kb on + strand, within AZOBR_RS08075 at 1704.215 kb on - strand, within AZOBR_RS08075 at 1704.376 kb on + strand, within AZOBR_RS08075 at 1704.377 kb on - strand, within AZOBR_RS08075 at 1704.732 kb on + strand, within AZOBR_RS08080 at 1704.961 kb on - strand, within AZOBR_RS08080 at 1705.282 kb on + strand, within AZOBR_RS08085 at 1705.879 kb on + strand at 1705.879 kb on + strand at 1705.880 kb on - strand at 1706.046 kb on + strand, within AZOBR_RS08090 at 1706.046 kb on + strand, within AZOBR_RS08090 at 1706.046 kb on + strand, within AZOBR_RS08090 at 1706.046 kb on + strand, within AZOBR_RS08090 at 1706.047 kb on - strand, within AZOBR_RS08090 at 1706.047 kb on - strand, within AZOBR_RS08090 at 1706.047 kb on - strand, within AZOBR_RS08090 at 1706.047 kb on - strand, within AZOBR_RS08090 at 1706.283 kb on + strand, within AZOBR_RS08090 at 1706.283 kb on + strand, within AZOBR_RS08090 at 1706.284 kb on - strand, within AZOBR_RS08090
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 1,704,214 + AZOBR_RS08075 0.63 +0.0 1,704,215 - AZOBR_RS08075 0.63 -1.9 1,704,376 + AZOBR_RS08075 0.82 -0.3 1,704,377 - AZOBR_RS08075 0.83 -1.5 1,704,732 + AZOBR_RS08080 0.36 -1.2 1,704,961 - AZOBR_RS08080 0.75 -0.9 1,705,282 + AZOBR_RS08085 0.17 -1.9 1,705,879 + -2.6 1,705,879 + -1.7 1,705,880 - -1.2 1,706,046 + AZOBR_RS08090 0.23 +0.5 1,706,046 + AZOBR_RS08090 0.23 -1.6 1,706,046 + AZOBR_RS08090 0.23 -2.7 1,706,046 + AZOBR_RS08090 0.23 -0.4 1,706,047 - AZOBR_RS08090 0.23 -2.2 1,706,047 - AZOBR_RS08090 0.23 -1.5 1,706,047 - AZOBR_RS08090 0.23 -1.0 1,706,047 - AZOBR_RS08090 0.23 -0.9 1,706,283 + AZOBR_RS08090 0.60 -2.3 1,706,283 + AZOBR_RS08090 0.60 -0.5 1,706,284 - AZOBR_RS08090 0.60 -0.2
Or see this region's nucleotide sequence