Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_29300

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_29295 and AO353_29300 are separated by 206 nucleotidesAO353_29300 and AO353_29305 are separated by 281 nucleotides AO353_29295: AO353_29295 - aldehyde dehydrogenase, at 6,363,478 to 6,364,968 _29295 AO353_29300: AO353_29300 - gamma-glutamylputrescine synthetase, at 6,365,175 to 6,366,551 _29300 AO353_29305: AO353_29305 - Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) (from data), at 6,366,833 to 6,367,594 _29305 Position (kb) 6365 6366 6367Strain fitness (log2 ratio) -2 -1 0 1 2at 6364.208 kb on + strand, within AO353_29295at 6364.208 kb on + strand, within AO353_29295at 6364.208 kb on + strand, within AO353_29295at 6364.208 kb on + strand, within AO353_29295at 6364.208 kb on + strand, within AO353_29295at 6364.208 kb on + strand, within AO353_29295at 6364.209 kb on - strand, within AO353_29295at 6364.209 kb on - strand, within AO353_29295at 6364.209 kb on - strand, within AO353_29295at 6364.209 kb on - strand, within AO353_29295at 6364.209 kb on - strand, within AO353_29295at 6364.210 kb on + strand, within AO353_29295at 6364.210 kb on + strandat 6364.211 kb on - strand, within AO353_29295at 6364.211 kb on - strand, within AO353_29295at 6364.493 kb on - strand, within AO353_29295at 6364.493 kb on - strand, within AO353_29295at 6364.493 kb on - strand, within AO353_29295at 6364.556 kb on + strand, within AO353_29295at 6364.556 kb on + strand, within AO353_29295at 6364.556 kb on + strand, within AO353_29295at 6364.557 kb on - strand, within AO353_29295at 6364.557 kb on - strand, within AO353_29295at 6364.889 kb on + strandat 6364.889 kb on + strandat 6364.890 kb on - strandat 6364.925 kb on - strandat 6364.959 kb on + strandat 6364.959 kb on + strandat 6364.960 kb on - strandat 6364.992 kb on + strandat 6364.992 kb on + strandat 6364.992 kb on + strandat 6364.993 kb on - strandat 6364.993 kb on - strandat 6364.993 kb on - strandat 6364.993 kb on - strandat 6364.993 kb on - strandat 6365.019 kb on + strandat 6365.019 kb on + strandat 6365.019 kb on + strandat 6365.019 kb on + strandat 6365.020 kb on - strandat 6365.020 kb on - strandat 6365.020 kb on - strandat 6365.059 kb on + strandat 6365.059 kb on + strandat 6365.060 kb on - strandat 6365.105 kb on + strandat 6365.138 kb on + strandat 6365.139 kb on - strandat 6365.139 kb on - strandat 6365.139 kb on - strandat 6365.139 kb on - strandat 6365.139 kb on - strandat 6365.183 kb on + strandat 6365.184 kb on - strandat 6365.191 kb on + strandat 6365.192 kb on - strandat 6365.192 kb on - strandat 6365.192 kb on - strandat 6365.200 kb on + strandat 6365.200 kb on + strandat 6365.200 kb on + strandat 6365.201 kb on - strandat 6365.201 kb on - strandat 6365.201 kb on - strandat 6365.201 kb on - strandat 6365.201 kb on - strandat 6365.272 kb on + strandat 6365.273 kb on - strandat 6365.273 kb on - strandat 6365.287 kb on + strandat 6365.287 kb on + strandat 6365.287 kb on + strandat 6365.287 kb on + strandat 6365.287 kb on + strandat 6365.287 kb on + strandat 6365.288 kb on - strandat 6365.288 kb on - strandat 6365.288 kb on - strandat 6365.288 kb on - strandat 6365.288 kb on - strandat 6365.288 kb on - strandat 6365.288 kb on - strandat 6365.368 kb on + strand, within AO353_29300at 6365.368 kb on + strand, within AO353_29300at 6365.369 kb on - strand, within AO353_29300at 6365.369 kb on - strand, within AO353_29300at 6365.369 kb on - strand, within AO353_29300at 6365.456 kb on - strand, within AO353_29300at 6365.576 kb on - strand, within AO353_29300at 6365.576 kb on - strand, within AO353_29300at 6365.576 kb on - strand, within AO353_29300at 6365.576 kb on - strand, within AO353_29300at 6365.599 kb on + strand, within AO353_29300at 6365.599 kb on + strand, within AO353_29300at 6365.673 kb on + strand, within AO353_29300at 6365.673 kb on + strand, within AO353_29300at 6365.674 kb on - strand, within AO353_29300at 6365.674 kb on - strand, within AO353_29300at 6365.815 kb on + strand, within AO353_29300at 6365.816 kb on - strand, within AO353_29300at 6365.816 kb on - strand, within AO353_29300at 6365.992 kb on + strand, within AO353_29300at 6365.992 kb on + strand, within AO353_29300at 6365.992 kb on + strand, within AO353_29300at 6366.016 kb on + strand, within AO353_29300at 6366.016 kb on + strand, within AO353_29300at 6366.016 kb on + strand, within AO353_29300at 6366.017 kb on - strand, within AO353_29300at 6366.103 kb on + strand, within AO353_29300at 6366.104 kb on - strand, within AO353_29300at 6366.407 kb on + strand, within AO353_29300at 6366.407 kb on + strand, within AO353_29300at 6366.407 kb on + strand, within AO353_29300at 6366.408 kb on - strand, within AO353_29300at 6366.408 kb on - strand, within AO353_29300at 6366.478 kb on + strandat 6366.478 kb on + strandat 6366.494 kb on - strandat 6366.560 kb on + strandat 6366.560 kb on + strandat 6366.560 kb on + strandat 6366.560 kb on + strandat 6366.560 kb on + strandat 6366.561 kb on - strandat 6366.561 kb on - strandat 6366.561 kb on - strandat 6366.563 kb on + strandat 6366.564 kb on - strandat 6366.570 kb on + strandat 6366.574 kb on + strandat 6366.650 kb on + strandat 6366.651 kb on - strandat 6366.651 kb on - strandat 6366.695 kb on - strandat 6366.767 kb on - strandat 6366.767 kb on - strandat 6366.828 kb on + strandat 6366.829 kb on - strandat 6366.914 kb on + strand, within AO353_29305at 6366.914 kb on + strand, within AO353_29305at 6366.914 kb on + strand, within AO353_29305at 6366.914 kb on + strand, within AO353_29305at 6366.914 kb on + strand, within AO353_29305at 6366.914 kb on + strand, within AO353_29305at 6366.915 kb on - strand, within AO353_29305at 6366.915 kb on - strand, within AO353_29305at 6366.915 kb on - strand, within AO353_29305at 6366.915 kb on - strand, within AO353_29305at 6366.915 kb on - strand, within AO353_29305at 6366.978 kb on + strand, within AO353_29305at 6366.979 kb on - strand, within AO353_29305at 6367.286 kb on + strand, within AO353_29305at 6367.286 kb on + strand, within AO353_29305at 6367.286 kb on + strand, within AO353_29305at 6367.526 kb on + strandat 6367.526 kb on + strandat 6367.527 kb on - strandat 6367.527 kb on - strandat 6367.534 kb on + strandat 6367.535 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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6,364,208 + AO353_29295 0.49 +0.5
6,364,208 + AO353_29295 0.49 +0.3
6,364,208 + AO353_29295 0.49 -0.4
6,364,208 + AO353_29295 0.49 -1.3
6,364,208 + AO353_29295 0.49 -0.7
6,364,208 + AO353_29295 0.49 +0.2
6,364,209 - AO353_29295 0.49 +0.3
6,364,209 - AO353_29295 0.49 +0.8
6,364,209 - AO353_29295 0.49 -0.5
6,364,209 - AO353_29295 0.49 -0.8
6,364,209 - AO353_29295 0.49 -0.7
6,364,210 + AO353_29295 0.49 -0.1
6,364,210 + +1.0
6,364,211 - AO353_29295 0.49 -2.0
6,364,211 - AO353_29295 0.49 +1.0
6,364,493 - AO353_29295 0.68 -1.3
6,364,493 - AO353_29295 0.68 -0.8
6,364,493 - AO353_29295 0.68 +0.2
6,364,556 + AO353_29295 0.72 -0.4
6,364,556 + AO353_29295 0.72 -0.7
6,364,556 + AO353_29295 0.72 -0.5
6,364,557 - AO353_29295 0.72 -0.3
6,364,557 - AO353_29295 0.72 -0.5
6,364,889 + -0.9
6,364,889 + -1.2
6,364,890 - -1.5
6,364,925 - +0.5
6,364,959 + -0.0
6,364,959 + -0.1
6,364,960 - +1.0
6,364,992 + +1.0
6,364,992 + +0.0
6,364,992 + -0.8
6,364,993 - +1.8
6,364,993 - -1.3
6,364,993 - -0.6
6,364,993 - +0.7
6,364,993 - +0.3
6,365,019 + -0.3
6,365,019 + -0.5
6,365,019 + +0.0
6,365,019 + +2.0
6,365,020 - +0.3
6,365,020 - -1.5
6,365,020 - +0.6
6,365,059 + -0.5
6,365,059 + +0.4
6,365,060 - +0.4
6,365,105 + -0.5
6,365,138 + -0.2
6,365,139 - +0.1
6,365,139 - +0.0
6,365,139 - +0.5
6,365,139 - +0.5
6,365,139 - -1.5
6,365,183 + -1.1
6,365,184 - -1.0
6,365,191 + -0.2
6,365,192 - +0.6
6,365,192 - +0.7
6,365,192 - +0.2
6,365,200 + +0.6
6,365,200 + -1.1
6,365,200 + -0.2
6,365,201 - -0.8
6,365,201 - -1.0
6,365,201 - +0.0
6,365,201 - -0.1
6,365,201 - +1.0
6,365,272 + +0.0
6,365,273 - -1.0
6,365,273 - +0.6
6,365,287 + -0.4
6,365,287 + +0.0
6,365,287 + -0.4
6,365,287 + -0.5
6,365,287 + -0.2
6,365,287 + -0.2
6,365,288 - +0.7
6,365,288 - -0.2
6,365,288 - -1.0
6,365,288 - -0.5
6,365,288 - -0.2
6,365,288 - -2.3
6,365,288 - +0.1
6,365,368 + AO353_29300 0.14 -1.0
6,365,368 + AO353_29300 0.14 +1.3
6,365,369 - AO353_29300 0.14 -0.6
6,365,369 - AO353_29300 0.14 +0.3
6,365,369 - AO353_29300 0.14 -0.4
6,365,456 - AO353_29300 0.20 +2.0
6,365,576 - AO353_29300 0.29 +0.2
6,365,576 - AO353_29300 0.29 -0.5
6,365,576 - AO353_29300 0.29 +0.6
6,365,576 - AO353_29300 0.29 +1.6
6,365,599 + AO353_29300 0.31 -0.3
6,365,599 + AO353_29300 0.31 -0.4
6,365,673 + AO353_29300 0.36 -0.6
6,365,673 + AO353_29300 0.36 -0.9
6,365,674 - AO353_29300 0.36 -0.5
6,365,674 - AO353_29300 0.36 +0.5
6,365,815 + AO353_29300 0.46 +0.5
6,365,816 - AO353_29300 0.47 -0.3
6,365,816 - AO353_29300 0.47 +2.0
6,365,992 + AO353_29300 0.59 -1.5
6,365,992 + AO353_29300 0.59 +0.7
6,365,992 + AO353_29300 0.59 +0.5
6,366,016 + AO353_29300 0.61 -1.9
6,366,016 + AO353_29300 0.61 -0.2
6,366,016 + AO353_29300 0.61 -0.4
6,366,017 - AO353_29300 0.61 +1.5
6,366,103 + AO353_29300 0.67 -0.7
6,366,104 - AO353_29300 0.67 -1.0
6,366,407 + AO353_29300 0.89 +1.0
6,366,407 + AO353_29300 0.89 -1.1
6,366,407 + AO353_29300 0.89 -0.3
6,366,408 - AO353_29300 0.90 -1.4
6,366,408 - AO353_29300 0.90 -0.4
6,366,478 + -1.3
6,366,478 + -0.3
6,366,494 - +0.9
6,366,560 + +1.2
6,366,560 + -0.2
6,366,560 + -0.8
6,366,560 + +1.0
6,366,560 + +0.8
6,366,561 - +0.0
6,366,561 - -0.2
6,366,561 - -0.8
6,366,563 + -1.3
6,366,564 - -2.0
6,366,570 + -0.1
6,366,574 + -2.3
6,366,650 + -0.8
6,366,651 - -0.5
6,366,651 - +0.3
6,366,695 - +0.0
6,366,767 - +0.8
6,366,767 - -0.5
6,366,828 + -0.5
6,366,829 - +0.2
6,366,914 + AO353_29305 0.11 +1.4
6,366,914 + AO353_29305 0.11 +0.0
6,366,914 + AO353_29305 0.11 -0.6
6,366,914 + AO353_29305 0.11 -1.3
6,366,914 + AO353_29305 0.11 +0.8
6,366,914 + AO353_29305 0.11 -0.2
6,366,915 - AO353_29305 0.11 -0.8
6,366,915 - AO353_29305 0.11 -1.3
6,366,915 - AO353_29305 0.11 -0.5
6,366,915 - AO353_29305 0.11 -2.1
6,366,915 - AO353_29305 0.11 -0.7
6,366,978 + AO353_29305 0.19 +1.0
6,366,979 - AO353_29305 0.19 +0.3
6,367,286 + AO353_29305 0.59 -1.5
6,367,286 + AO353_29305 0.59 -0.4
6,367,286 + AO353_29305 0.59 +1.0
6,367,526 + +2.6
6,367,526 + +0.2
6,367,527 - -1.0
6,367,527 - +0.5
6,367,534 + +0.8
6,367,535 - -0.2

Or see this region's nucleotide sequence