Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3669 and rpmE are separated by 511 nucleotides rpmE and Shewana3_3671 are separated by 165 nucleotides
Shewana3_3669: Shewana3_3669 - malic enzyme, NAD-binding (RefSeq), at 4,406,608 to 4,407,852
_3669
Shewana3_3670: rpmE - 50S ribosomal protein L31 (RefSeq), at 4,408,364 to 4,408,576
rpmE
Shewana3_3671: Shewana3_3671 - response regulator receiver protein (RefSeq), at 4,408,742 to 4,409,917
_3671
Position (kb)
4408
4409 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 4407.664 kb on + strand, within Shewana3_3669 at 4407.850 kb on + strand at 4407.890 kb on - strand at 4407.928 kb on + strand at 4407.946 kb on - strand at 4407.951 kb on + strand at 4407.951 kb on + strand at 4408.099 kb on + strand at 4408.823 kb on + strand at 4408.875 kb on + strand, within Shewana3_3671 at 4409.061 kb on + strand, within Shewana3_3671 at 4409.088 kb on + strand, within Shewana3_3671 at 4409.088 kb on + strand, within Shewana3_3671 at 4409.157 kb on + strand, within Shewana3_3671 at 4409.172 kb on + strand, within Shewana3_3671 at 4409.172 kb on + strand, within Shewana3_3671 at 4409.180 kb on - strand, within Shewana3_3671 at 4409.180 kb on - strand, within Shewana3_3671 at 4409.202 kb on + strand, within Shewana3_3671 at 4409.210 kb on - strand, within Shewana3_3671 at 4409.230 kb on - strand, within Shewana3_3671 at 4409.230 kb on - strand, within Shewana3_3671 at 4409.307 kb on + strand, within Shewana3_3671 at 4409.307 kb on + strand, within Shewana3_3671 at 4409.549 kb on + strand, within Shewana3_3671
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 4,407,664 + Shewana3_3669 0.85 +0.5 4,407,850 + -0.2 4,407,890 - -0.7 4,407,928 + +0.2 4,407,946 - -0.9 4,407,951 + +0.5 4,407,951 + -5.4 4,408,099 + -1.7 4,408,823 + -0.7 4,408,875 + Shewana3_3671 0.11 +0.0 4,409,061 + Shewana3_3671 0.27 +1.3 4,409,088 + Shewana3_3671 0.29 +0.2 4,409,088 + Shewana3_3671 0.29 +0.1 4,409,157 + Shewana3_3671 0.35 -1.5 4,409,172 + Shewana3_3671 0.37 -3.2 4,409,172 + Shewana3_3671 0.37 +0.7 4,409,180 - Shewana3_3671 0.37 -0.1 4,409,180 - Shewana3_3671 0.37 +0.3 4,409,202 + Shewana3_3671 0.39 -2.8 4,409,210 - Shewana3_3671 0.40 -2.1 4,409,230 - Shewana3_3671 0.41 +0.8 4,409,230 - Shewana3_3671 0.41 +0.5 4,409,307 + Shewana3_3671 0.48 +0.6 4,409,307 + Shewana3_3671 0.48 +0.9 4,409,549 + Shewana3_3671 0.69 -0.7
Or see this region's nucleotide sequence