Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3478 and Shewana3_3479 are separated by 148 nucleotides Shewana3_3479 and Shewana3_3480 are separated by 354 nucleotides Shewana3_3480 and Shewana3_3481 are separated by 84 nucleotides Shewana3_3481 and Shewana3_3482 are separated by 333 nucleotides
Shewana3_3478: Shewana3_3478 - blue (type1) copper domain-containing protein (RefSeq), at 4,172,215 to 4,172,691
_3478
Shewana3_3479: Shewana3_3479 - hypothetical protein (RefSeq), at 4,172,840 to 4,173,145
_3479
Shewana3_3480: Shewana3_3480 - glycerophosphoryl diester phosphodiesterase (RefSeq), at 4,173,500 to 4,174,765
_3480
Shewana3_3481: Shewana3_3481 - hypoxanthine-guanine phosphoribosyltransferase (RefSeq), at 4,174,850 to 4,175,416
_3481
Shewana3_3482: Shewana3_3482 - alkaline phosphatase (RefSeq), at 4,175,750 to 4,177,516
_3482
Position (kb)
4173
4174
4175 Strain fitness (log2 ratio)
-2
-1
0
1 at 4172.554 kb on + strand, within Shewana3_3478 at 4172.562 kb on - strand, within Shewana3_3478 at 4172.642 kb on + strand, within Shewana3_3478 at 4172.731 kb on - strand at 4173.010 kb on - strand, within Shewana3_3479 at 4173.097 kb on - strand, within Shewana3_3479 at 4173.103 kb on - strand, within Shewana3_3479 at 4173.293 kb on + strand at 4173.370 kb on - strand at 4173.548 kb on - strand at 4173.666 kb on - strand, within Shewana3_3480 at 4173.696 kb on - strand, within Shewana3_3480 at 4173.818 kb on + strand, within Shewana3_3480 at 4173.842 kb on + strand, within Shewana3_3480 at 4173.850 kb on - strand, within Shewana3_3480 at 4173.908 kb on - strand, within Shewana3_3480 at 4174.021 kb on + strand, within Shewana3_3480 at 4174.082 kb on + strand, within Shewana3_3480 at 4174.140 kb on + strand, within Shewana3_3480 at 4174.210 kb on - strand, within Shewana3_3480 at 4174.210 kb on - strand, within Shewana3_3480 at 4174.405 kb on - strand, within Shewana3_3480 at 4174.419 kb on - strand, within Shewana3_3480 at 4174.424 kb on - strand, within Shewana3_3480 at 4174.451 kb on + strand, within Shewana3_3480 at 4174.475 kb on + strand, within Shewana3_3480 at 4174.529 kb on + strand, within Shewana3_3480 at 4174.712 kb on + strand at 4174.757 kb on + strand at 4174.955 kb on + strand, within Shewana3_3481 at 4174.963 kb on - strand, within Shewana3_3481 at 4174.968 kb on - strand, within Shewana3_3481 at 4175.162 kb on - strand, within Shewana3_3481 at 4175.350 kb on - strand, within Shewana3_3481 at 4175.427 kb on - strand at 4175.536 kb on + strand at 4175.632 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 4,172,554 + Shewana3_3478 0.71 -1.6 4,172,562 - Shewana3_3478 0.73 +0.2 4,172,642 + Shewana3_3478 0.90 -0.1 4,172,731 - +0.5 4,173,010 - Shewana3_3479 0.56 +0.1 4,173,097 - Shewana3_3479 0.84 +0.7 4,173,103 - Shewana3_3479 0.86 -1.5 4,173,293 + +0.4 4,173,370 - -1.5 4,173,548 - +0.9 4,173,666 - Shewana3_3480 0.13 +0.1 4,173,696 - Shewana3_3480 0.15 +0.8 4,173,818 + Shewana3_3480 0.25 -0.7 4,173,842 + Shewana3_3480 0.27 +0.9 4,173,850 - Shewana3_3480 0.28 +0.3 4,173,908 - Shewana3_3480 0.32 +0.7 4,174,021 + Shewana3_3480 0.41 +0.5 4,174,082 + Shewana3_3480 0.46 +0.5 4,174,140 + Shewana3_3480 0.51 -1.9 4,174,210 - Shewana3_3480 0.56 -1.4 4,174,210 - Shewana3_3480 0.56 +0.1 4,174,405 - Shewana3_3480 0.71 -0.6 4,174,419 - Shewana3_3480 0.73 +0.3 4,174,424 - Shewana3_3480 0.73 -1.9 4,174,451 + Shewana3_3480 0.75 +0.3 4,174,475 + Shewana3_3480 0.77 +0.8 4,174,529 + Shewana3_3480 0.81 -1.8 4,174,712 + -2.0 4,174,757 + -1.3 4,174,955 + Shewana3_3481 0.19 +0.7 4,174,963 - Shewana3_3481 0.20 -0.3 4,174,968 - Shewana3_3481 0.21 +0.3 4,175,162 - Shewana3_3481 0.55 -1.2 4,175,350 - Shewana3_3481 0.88 +0.6 4,175,427 - +0.4 4,175,536 + +0.2 4,175,632 - +0.2
Or see this region's nucleotide sequence