Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3416

Experiment: L-Glutamine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_3415 and Shewana3_3416 are separated by 155 nucleotidesShewana3_3416 and Shewana3_3417 are separated by 137 nucleotides Shewana3_3415: Shewana3_3415 - hypothetical protein (RefSeq), at 4,085,447 to 4,086,055 _3415 Shewana3_3416: Shewana3_3416 - D-3-phosphoglycerate dehydrogenase (RefSeq), at 4,086,211 to 4,087,440 _3416 Shewana3_3417: Shewana3_3417 - glycine cleavage T protein (aminomethyl transferase) (RefSeq), at 4,087,578 to 4,088,534 _3417 Position (kb) 4086 4087 4088Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 4085.316 kb on + strandat 4085.324 kb on - strandat 4085.445 kb on + strandat 4085.447 kb on - strandat 4085.447 kb on - strandat 4085.453 kb on - strandat 4085.488 kb on - strandat 4085.590 kb on - strand, within Shewana3_3415at 4085.798 kb on + strand, within Shewana3_3415at 4085.803 kb on + strand, within Shewana3_3415at 4085.832 kb on + strand, within Shewana3_3415at 4085.845 kb on - strand, within Shewana3_3415at 4086.016 kb on - strandat 4086.150 kb on - strandat 4086.682 kb on + strand, within Shewana3_3416at 4086.965 kb on + strand, within Shewana3_3416at 4086.975 kb on + strand, within Shewana3_3416at 4086.989 kb on - strand, within Shewana3_3416at 4087.132 kb on - strand, within Shewana3_3416at 4087.297 kb on + strand, within Shewana3_3416at 4087.536 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
remove
4,085,316 + +0.6
4,085,324 - -1.9
4,085,445 + -0.8
4,085,447 - +0.1
4,085,447 - +0.2
4,085,453 - -1.2
4,085,488 - -1.7
4,085,590 - Shewana3_3415 0.23 -1.5
4,085,798 + Shewana3_3415 0.58 +0.3
4,085,803 + Shewana3_3415 0.58 -0.5
4,085,832 + Shewana3_3415 0.63 +1.2
4,085,845 - Shewana3_3415 0.65 -1.2
4,086,016 - -1.6
4,086,150 - -5.9
4,086,682 + Shewana3_3416 0.38 -5.8
4,086,965 + Shewana3_3416 0.61 -6.2
4,086,975 + Shewana3_3416 0.62 -6.8
4,086,989 - Shewana3_3416 0.63 -5.8
4,087,132 - Shewana3_3416 0.75 -4.6
4,087,297 + Shewana3_3416 0.88 -5.8
4,087,536 + -1.1

Or see this region's nucleotide sequence