Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3398 and Shewana3_3399 are separated by 9 nucleotides Shewana3_3399 and Shewana3_3400 are separated by 88 nucleotides Shewana3_3400 and Shewana3_3401 are separated by 353 nucleotides
Shewana3_3398: Shewana3_3398 - alpha/beta hydrolase fold (RefSeq), at 4,067,477 to 4,068,460
_3398
Shewana3_3399: Shewana3_3399 - hypothetical protein (RefSeq), at 4,068,470 to 4,068,715
_3399
Shewana3_3400: Shewana3_3400 - phosphoribulokinase/uridine kinase (RefSeq), at 4,068,804 to 4,069,691
_3400
Shewana3_3401: Shewana3_3401 - GCN5-related N-acetyltransferase (RefSeq), at 4,070,045 to 4,070,557
_3401
Position (kb)
4068
4069
4070 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4067.825 kb on - strand, within Shewana3_3398 at 4067.872 kb on - strand, within Shewana3_3398 at 4067.900 kb on + strand, within Shewana3_3398 at 4067.900 kb on + strand, within Shewana3_3398 at 4067.939 kb on - strand, within Shewana3_3398 at 4067.959 kb on + strand, within Shewana3_3398 at 4068.223 kb on - strand, within Shewana3_3398 at 4068.223 kb on - strand, within Shewana3_3398 at 4068.237 kb on + strand, within Shewana3_3398 at 4068.363 kb on + strand at 4068.410 kb on - strand at 4068.463 kb on - strand at 4068.573 kb on + strand, within Shewana3_3399 at 4069.079 kb on - strand, within Shewana3_3400 at 4069.079 kb on - strand, within Shewana3_3400 at 4069.194 kb on + strand, within Shewana3_3400 at 4069.202 kb on - strand, within Shewana3_3400 at 4069.218 kb on + strand, within Shewana3_3400 at 4069.320 kb on + strand, within Shewana3_3400 at 4069.328 kb on - strand, within Shewana3_3400 at 4069.328 kb on - strand, within Shewana3_3400 at 4069.387 kb on - strand, within Shewana3_3400 at 4069.450 kb on + strand, within Shewana3_3400 at 4069.558 kb on + strand, within Shewana3_3400 at 4069.558 kb on + strand, within Shewana3_3400 at 4069.579 kb on + strand, within Shewana3_3400 at 4069.612 kb on + strand at 4069.675 kb on - strand at 4069.844 kb on + strand at 4069.868 kb on - strand at 4070.093 kb on + strand at 4070.141 kb on + strand, within Shewana3_3401 at 4070.143 kb on - strand, within Shewana3_3401 at 4070.339 kb on + strand, within Shewana3_3401 at 4070.383 kb on - strand, within Shewana3_3401
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 4,067,825 - Shewana3_3398 0.35 +0.3 4,067,872 - Shewana3_3398 0.40 -1.4 4,067,900 + Shewana3_3398 0.43 +0.2 4,067,900 + Shewana3_3398 0.43 +0.4 4,067,939 - Shewana3_3398 0.47 +0.2 4,067,959 + Shewana3_3398 0.49 -1.5 4,068,223 - Shewana3_3398 0.76 -0.1 4,068,223 - Shewana3_3398 0.76 -0.9 4,068,237 + Shewana3_3398 0.77 -1.2 4,068,363 + -0.4 4,068,410 - +0.1 4,068,463 - +0.4 4,068,573 + Shewana3_3399 0.42 +0.8 4,069,079 - Shewana3_3400 0.31 -1.0 4,069,079 - Shewana3_3400 0.31 +0.2 4,069,194 + Shewana3_3400 0.44 +1.0 4,069,202 - Shewana3_3400 0.45 +0.7 4,069,218 + Shewana3_3400 0.47 +0.6 4,069,320 + Shewana3_3400 0.58 +2.0 4,069,328 - Shewana3_3400 0.59 +0.7 4,069,328 - Shewana3_3400 0.59 +0.7 4,069,387 - Shewana3_3400 0.66 +0.3 4,069,450 + Shewana3_3400 0.73 -0.9 4,069,558 + Shewana3_3400 0.85 -1.4 4,069,558 + Shewana3_3400 0.85 +0.7 4,069,579 + Shewana3_3400 0.87 -0.7 4,069,612 + +0.7 4,069,675 - +0.6 4,069,844 + +0.6 4,069,868 - -3.5 4,070,093 + +0.0 4,070,141 + Shewana3_3401 0.19 +0.8 4,070,143 - Shewana3_3401 0.19 +0.4 4,070,339 + Shewana3_3401 0.57 -0.8 4,070,383 - Shewana3_3401 0.66 +0.3
Or see this region's nucleotide sequence