Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3266 and Shewana3_3267 are separated by 835 nucleotides Shewana3_3267 and Shewana3_3268 are separated by 536 nucleotides Shewana3_3268 and Shewana3_3269 are separated by 53 nucleotides
Shewana3_3266: Shewana3_3266 - hypothetical protein (RefSeq), at 3,908,278 to 3,908,571
_3266
Shewana3_3267: Shewana3_3267 - hypothetical protein (RefSeq), at 3,909,407 to 3,909,631
_3267
Shewana3_3268: Shewana3_3268 - hypothetical protein (RefSeq), at 3,910,168 to 3,910,290
_3268
Shewana3_3269: Shewana3_3269 - hypothetical protein (RefSeq), at 3,910,344 to 3,910,727
_3269
Position (kb)
3909
3910 Strain fitness (log2 ratio)
-2
-1
0
1 at 3908.498 kb on + strand, within Shewana3_3266 at 3908.608 kb on - strand at 3908.652 kb on - strand at 3908.655 kb on + strand at 3908.722 kb on - strand at 3908.850 kb on - strand at 3908.893 kb on - strand at 3909.062 kb on + strand at 3909.062 kb on + strand at 3909.174 kb on - strand at 3909.198 kb on + strand at 3909.307 kb on + strand at 3909.343 kb on + strand at 3909.414 kb on + strand at 3909.414 kb on + strand at 3909.494 kb on - strand, within Shewana3_3267 at 3909.799 kb on + strand at 3909.968 kb on + strand at 3910.143 kb on + strand at 3910.205 kb on + strand, within Shewana3_3268 at 3910.208 kb on + strand, within Shewana3_3268 at 3910.390 kb on + strand, within Shewana3_3269 at 3910.506 kb on + strand, within Shewana3_3269
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 3,908,498 + Shewana3_3266 0.75 -0.6 3,908,608 - +1.0 3,908,652 - -1.2 3,908,655 + +0.3 3,908,722 - +0.6 3,908,850 - +0.0 3,908,893 - +0.1 3,909,062 + +1.1 3,909,062 + -1.2 3,909,174 - -0.3 3,909,198 + -1.1 3,909,307 + +0.8 3,909,343 + +0.4 3,909,414 + -2.0 3,909,414 + +0.2 3,909,494 - Shewana3_3267 0.39 +0.6 3,909,799 + +0.5 3,909,968 + +0.9 3,910,143 + -0.2 3,910,205 + Shewana3_3268 0.30 +0.7 3,910,208 + Shewana3_3268 0.33 +0.0 3,910,390 + Shewana3_3269 0.12 +0.2 3,910,506 + Shewana3_3269 0.42 +0.3
Or see this region's nucleotide sequence