Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3152

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3150 and Shewana3_3151 are separated by 222 nucleotidesShewana3_3151 and Shewana3_3152 overlap by 8 nucleotidesShewana3_3152 and Shewana3_3153 are separated by 44 nucleotides Shewana3_3150: Shewana3_3150 - hemerythrin HHE cation binding domain-containing protein (RefSeq), at 3,778,435 to 3,778,971 _3150 Shewana3_3151: Shewana3_3151 - hypothetical protein (RefSeq), at 3,779,194 to 3,779,901 _3151 Shewana3_3152: Shewana3_3152 - ECF subfamily RNA polymerase sigma-24 factor (RefSeq), at 3,779,894 to 3,780,496 _3152 Shewana3_3153: Shewana3_3153 - von Willebrand factor, type A (RefSeq), at 3,780,541 to 3,782,382 _3153 Position (kb) 3779 3780 3781Strain fitness (log2 ratio) -3 -2 -1 0 1at 3779.411 kb on - strand, within Shewana3_3151at 3779.884 kb on - strandat 3779.950 kb on - strandat 3780.065 kb on + strand, within Shewana3_3152at 3780.092 kb on - strand, within Shewana3_3152at 3780.137 kb on - strand, within Shewana3_3152at 3780.255 kb on + strand, within Shewana3_3152at 3780.296 kb on + strand, within Shewana3_3152at 3780.304 kb on - strand, within Shewana3_3152at 3780.448 kb on + strandat 3780.485 kb on + strandat 3780.709 kb on - strandat 3780.773 kb on - strand, within Shewana3_3153at 3780.995 kb on + strand, within Shewana3_3153at 3781.307 kb on - strand, within Shewana3_3153at 3781.321 kb on - strand, within Shewana3_3153

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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3,779,411 - Shewana3_3151 0.31 -0.9
3,779,884 - +0.0
3,779,950 - +0.4
3,780,065 + Shewana3_3152 0.28 -0.7
3,780,092 - Shewana3_3152 0.33 +0.1
3,780,137 - Shewana3_3152 0.40 -1.2
3,780,255 + Shewana3_3152 0.60 -1.2
3,780,296 + Shewana3_3152 0.67 +0.2
3,780,304 - Shewana3_3152 0.68 -1.3
3,780,448 + -2.8
3,780,485 + -0.1
3,780,709 - -2.0
3,780,773 - Shewana3_3153 0.13 -1.6
3,780,995 + Shewana3_3153 0.25 +0.4
3,781,307 - Shewana3_3153 0.42 +0.1
3,781,321 - Shewana3_3153 0.42 +0.4

Or see this region's nucleotide sequence