Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3146

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3145 and Shewana3_3146 are separated by 239 nucleotidesShewana3_3146 and Shewana3_3147 are separated by 248 nucleotides Shewana3_3145: Shewana3_3145 - putative phosphoketolase (RefSeq), at 3,771,375 to 3,773,741 _3145 Shewana3_3146: Shewana3_3146 - OmpA/MotB domain-containing protein (RefSeq), at 3,773,981 to 3,775,102 _3146 Shewana3_3147: Shewana3_3147 - transaldolase B (RefSeq), at 3,775,351 to 3,776,307 _3147 Position (kb) 3773 3774 3775 3776Strain fitness (log2 ratio) -1 0 1at 3773.193 kb on - strand, within Shewana3_3145at 3773.350 kb on + strand, within Shewana3_3145at 3773.706 kb on - strandat 3773.920 kb on - strandat 3773.949 kb on - strandat 3773.996 kb on + strandat 3774.092 kb on + strandat 3774.278 kb on + strand, within Shewana3_3146at 3774.315 kb on + strand, within Shewana3_3146at 3774.965 kb on + strand, within Shewana3_3146at 3775.091 kb on + strandat 3775.142 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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3,773,193 - Shewana3_3145 0.77 +0.4
3,773,350 + Shewana3_3145 0.83 -0.2
3,773,706 - +0.4
3,773,920 - -0.6
3,773,949 - +1.0
3,773,996 + +0.9
3,774,092 + -0.6
3,774,278 + Shewana3_3146 0.26 +1.3
3,774,315 + Shewana3_3146 0.30 +1.1
3,774,965 + Shewana3_3146 0.88 +1.2
3,775,091 + +0.4
3,775,142 + -0.1

Or see this region's nucleotide sequence