Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3144 and Shewana3_3145 are separated by 430 nucleotides Shewana3_3145 and Shewana3_3146 are separated by 239 nucleotides
Shewana3_3144: Shewana3_3144 - amino acid carrier protein (RefSeq), at 3,769,478 to 3,770,944
_3144
Shewana3_3145: Shewana3_3145 - putative phosphoketolase (RefSeq), at 3,771,375 to 3,773,741
_3145
Shewana3_3146: Shewana3_3146 - OmpA/MotB domain-containing protein (RefSeq), at 3,773,981 to 3,775,102
_3146
Position (kb)
3771
3772
3773
3774 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4
5 at 3770.386 kb on - strand, within Shewana3_3144 at 3770.461 kb on - strand, within Shewana3_3144 at 3770.471 kb on - strand, within Shewana3_3144 at 3770.530 kb on - strand, within Shewana3_3144 at 3770.631 kb on + strand, within Shewana3_3144 at 3770.729 kb on - strand, within Shewana3_3144 at 3770.806 kb on + strand at 3770.814 kb on - strand at 3770.901 kb on + strand at 3770.909 kb on - strand at 3770.989 kb on - strand at 3771.097 kb on - strand at 3771.097 kb on - strand at 3771.158 kb on + strand at 3771.161 kb on - strand at 3771.206 kb on - strand at 3771.328 kb on + strand at 3771.351 kb on - strand at 3771.367 kb on + strand at 3771.524 kb on - strand at 3771.529 kb on - strand at 3771.539 kb on + strand at 3771.618 kb on - strand, within Shewana3_3145 at 3771.641 kb on - strand, within Shewana3_3145 at 3771.746 kb on - strand, within Shewana3_3145 at 3771.785 kb on - strand, within Shewana3_3145 at 3771.816 kb on + strand, within Shewana3_3145 at 3771.816 kb on + strand, within Shewana3_3145 at 3771.834 kb on + strand, within Shewana3_3145 at 3771.834 kb on + strand, within Shewana3_3145 at 3771.842 kb on - strand, within Shewana3_3145 at 3771.844 kb on + strand, within Shewana3_3145 at 3771.864 kb on + strand, within Shewana3_3145 at 3771.962 kb on - strand, within Shewana3_3145 at 3772.018 kb on + strand, within Shewana3_3145 at 3772.128 kb on + strand, within Shewana3_3145 at 3772.157 kb on - strand, within Shewana3_3145 at 3772.218 kb on + strand, within Shewana3_3145 at 3772.325 kb on - strand, within Shewana3_3145 at 3772.325 kb on - strand, within Shewana3_3145 at 3772.391 kb on - strand, within Shewana3_3145 at 3772.458 kb on + strand, within Shewana3_3145 at 3772.641 kb on - strand, within Shewana3_3145 at 3772.702 kb on - strand, within Shewana3_3145 at 3772.825 kb on + strand, within Shewana3_3145 at 3772.881 kb on + strand, within Shewana3_3145 at 3772.938 kb on - strand, within Shewana3_3145 at 3773.193 kb on - strand, within Shewana3_3145 at 3773.350 kb on + strand, within Shewana3_3145 at 3773.706 kb on - strand at 3773.920 kb on - strand at 3773.949 kb on - strand at 3773.996 kb on + strand at 3774.092 kb on + strand at 3774.278 kb on + strand, within Shewana3_3146 at 3774.315 kb on + strand, within Shewana3_3146
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 3,770,386 - Shewana3_3144 0.62 +4.0 3,770,461 - Shewana3_3144 0.67 +4.9 3,770,471 - Shewana3_3144 0.68 +4.0 3,770,530 - Shewana3_3144 0.72 +3.8 3,770,631 + Shewana3_3144 0.79 +3.6 3,770,729 - Shewana3_3144 0.85 +3.0 3,770,806 + +3.6 3,770,814 - +3.4 3,770,901 + +3.6 3,770,909 - +1.9 3,770,989 - +3.7 3,771,097 - +3.0 3,771,097 - +2.5 3,771,158 + -0.5 3,771,161 - -1.1 3,771,206 - +2.2 3,771,328 + +0.9 3,771,351 - -1.5 3,771,367 + -2.0 3,771,524 - -5.5 3,771,529 - -4.0 3,771,539 + +0.3 3,771,618 - Shewana3_3145 0.10 +0.3 3,771,641 - Shewana3_3145 0.11 -1.1 3,771,746 - Shewana3_3145 0.16 -0.2 3,771,785 - Shewana3_3145 0.17 -0.1 3,771,816 + Shewana3_3145 0.19 -2.0 3,771,816 + Shewana3_3145 0.19 -1.5 3,771,834 + Shewana3_3145 0.19 -1.3 3,771,834 + Shewana3_3145 0.19 +0.7 3,771,842 - Shewana3_3145 0.20 +0.4 3,771,844 + Shewana3_3145 0.20 -0.7 3,771,864 + Shewana3_3145 0.21 +0.8 3,771,962 - Shewana3_3145 0.25 +0.8 3,772,018 + Shewana3_3145 0.27 -3.4 3,772,128 + Shewana3_3145 0.32 -0.0 3,772,157 - Shewana3_3145 0.33 +0.1 3,772,218 + Shewana3_3145 0.36 -1.3 3,772,325 - Shewana3_3145 0.40 +0.3 3,772,325 - Shewana3_3145 0.40 -1.5 3,772,391 - Shewana3_3145 0.43 +0.0 3,772,458 + Shewana3_3145 0.46 +0.2 3,772,641 - Shewana3_3145 0.53 +0.3 3,772,702 - Shewana3_3145 0.56 +0.4 3,772,825 + Shewana3_3145 0.61 -0.0 3,772,881 + Shewana3_3145 0.64 -1.8 3,772,938 - Shewana3_3145 0.66 -2.9 3,773,193 - Shewana3_3145 0.77 +0.4 3,773,350 + Shewana3_3145 0.83 -0.2 3,773,706 - +0.4 3,773,920 - -0.6 3,773,949 - +1.0 3,773,996 + +0.9 3,774,092 + -0.6 3,774,278 + Shewana3_3146 0.26 +1.3 3,774,315 + Shewana3_3146 0.30 +1.1
Or see this region's nucleotide sequence