Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3069

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3067 and Shewana3_3068 overlap by 8 nucleotidesShewana3_3068 and Shewana3_3069 are separated by 74 nucleotidesShewana3_3069 and Shewana3_3070 are separated by 191 nucleotides Shewana3_3067: Shewana3_3067 - iron-sulfur cluster insertion protein ErpA (RefSeq), at 3,679,071 to 3,679,421 _3067 Shewana3_3068: Shewana3_3068 - hypothetical protein (RefSeq), at 3,679,414 to 3,680,220 _3068 Shewana3_3069: Shewana3_3069 - Cl- channel, voltage-gated family protein (RefSeq), at 3,680,295 to 3,682,019 _3069 Shewana3_3070: Shewana3_3070 - aspartate carbamoyltransferase (RefSeq), at 3,682,211 to 3,683,230 _3070 Position (kb) 3680 3681 3682 3683Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 3679.532 kb on - strand, within Shewana3_3068at 3679.551 kb on + strand, within Shewana3_3068at 3679.620 kb on + strand, within Shewana3_3068at 3679.626 kb on - strand, within Shewana3_3068at 3679.732 kb on - strand, within Shewana3_3068at 3679.747 kb on + strand, within Shewana3_3068at 3679.755 kb on - strand, within Shewana3_3068at 3679.883 kb on - strand, within Shewana3_3068at 3680.102 kb on - strand, within Shewana3_3068at 3680.106 kb on + strand, within Shewana3_3068at 3680.232 kb on - strandat 3680.278 kb on - strandat 3680.278 kb on - strandat 3680.285 kb on + strandat 3680.285 kb on + strandat 3680.293 kb on - strandat 3680.388 kb on + strandat 3680.496 kb on - strand, within Shewana3_3069at 3680.636 kb on - strand, within Shewana3_3069at 3680.878 kb on - strand, within Shewana3_3069at 3680.930 kb on - strand, within Shewana3_3069at 3680.935 kb on + strand, within Shewana3_3069at 3681.061 kb on + strand, within Shewana3_3069at 3681.061 kb on + strand, within Shewana3_3069at 3681.066 kb on + strand, within Shewana3_3069at 3681.069 kb on - strand, within Shewana3_3069at 3681.112 kb on - strand, within Shewana3_3069at 3681.131 kb on - strand, within Shewana3_3069at 3681.191 kb on - strand, within Shewana3_3069at 3681.396 kb on + strand, within Shewana3_3069at 3681.404 kb on - strand, within Shewana3_3069at 3681.776 kb on - strand, within Shewana3_3069at 3681.776 kb on - strand, within Shewana3_3069at 3681.883 kb on - strandat 3681.969 kb on + strandat 3682.034 kb on + strandat 3682.126 kb on - strandat 3682.145 kb on + strandat 3682.242 kb on + strandat 3682.334 kb on - strand, within Shewana3_3070at 3682.379 kb on + strand, within Shewana3_3070at 3682.394 kb on + strand, within Shewana3_3070at 3682.576 kb on - strand, within Shewana3_3070at 3682.658 kb on + strand, within Shewana3_3070at 3682.809 kb on + strand, within Shewana3_3070

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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3,679,532 - Shewana3_3068 0.15 +0.2
3,679,551 + Shewana3_3068 0.17 -0.0
3,679,620 + Shewana3_3068 0.26 -0.6
3,679,626 - Shewana3_3068 0.26 -0.2
3,679,732 - Shewana3_3068 0.39 +0.8
3,679,747 + Shewana3_3068 0.41 -0.1
3,679,755 - Shewana3_3068 0.42 -1.1
3,679,883 - Shewana3_3068 0.58 +0.2
3,680,102 - Shewana3_3068 0.85 +0.3
3,680,106 + Shewana3_3068 0.86 +0.6
3,680,232 - +0.3
3,680,278 - -1.8
3,680,278 - -1.2
3,680,285 + +1.1
3,680,285 + +0.6
3,680,293 - -1.4
3,680,388 + -1.5
3,680,496 - Shewana3_3069 0.12 +0.3
3,680,636 - Shewana3_3069 0.20 +0.3
3,680,878 - Shewana3_3069 0.34 +0.2
3,680,930 - Shewana3_3069 0.37 +0.4
3,680,935 + Shewana3_3069 0.37 -1.7
3,681,061 + Shewana3_3069 0.44 -0.1
3,681,061 + Shewana3_3069 0.44 -0.1
3,681,066 + Shewana3_3069 0.45 -1.6
3,681,069 - Shewana3_3069 0.45 +0.3
3,681,112 - Shewana3_3069 0.47 -0.1
3,681,131 - Shewana3_3069 0.48 +0.1
3,681,191 - Shewana3_3069 0.52 -0.5
3,681,396 + Shewana3_3069 0.64 -0.6
3,681,404 - Shewana3_3069 0.64 +0.0
3,681,776 - Shewana3_3069 0.86 +0.5
3,681,776 - Shewana3_3069 0.86 +0.3
3,681,883 - +0.0
3,681,969 + +0.2
3,682,034 + +0.5
3,682,126 - -0.9
3,682,145 + -2.1
3,682,242 + -2.9
3,682,334 - Shewana3_3070 0.12 -3.6
3,682,379 + Shewana3_3070 0.16 -4.3
3,682,394 + Shewana3_3070 0.18 -7.1
3,682,576 - Shewana3_3070 0.36 -5.9
3,682,658 + Shewana3_3070 0.44 -3.6
3,682,809 + Shewana3_3070 0.59 -5.4

Or see this region's nucleotide sequence