Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2893

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2891 and Shewana3_2892 are separated by 153 nucleotidesShewana3_2892 and Shewana3_2893 are separated by 87 nucleotidesShewana3_2893 and Shewana3_2894 overlap by 20 nucleotides Shewana3_2891: Shewana3_2891 - putative RNA 2'-O-ribose methyltransferase (RefSeq), at 3,461,304 to 3,462,389 _2891 Shewana3_2892: Shewana3_2892 - hypothetical protein (RefSeq), at 3,462,543 to 3,462,935 _2892 Shewana3_2893: Shewana3_2893 - hypothetical protein (RefSeq), at 3,463,023 to 3,463,694 _2893 Shewana3_2894: Shewana3_2894 - DNA-binding transcriptional activator GcvA (RefSeq), at 3,463,675 to 3,464,586 _2894 Position (kb) 3463 3464Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3462.079 kb on + strand, within Shewana3_2891at 3462.140 kb on - strand, within Shewana3_2891at 3462.518 kb on + strandat 3462.611 kb on - strand, within Shewana3_2892at 3462.665 kb on + strand, within Shewana3_2892at 3462.665 kb on + strand, within Shewana3_2892at 3462.681 kb on - strand, within Shewana3_2892at 3463.005 kb on - strandat 3463.188 kb on - strand, within Shewana3_2893at 3463.379 kb on - strand, within Shewana3_2893at 3463.390 kb on + strand, within Shewana3_2893at 3463.392 kb on - strand, within Shewana3_2893at 3463.392 kb on - strand, within Shewana3_2893at 3463.392 kb on - strand, within Shewana3_2893at 3463.398 kb on - strand, within Shewana3_2893at 3463.398 kb on - strand, within Shewana3_2893at 3463.398 kb on - strand, within Shewana3_2893at 3463.398 kb on - strand, within Shewana3_2893at 3463.398 kb on - strand, within Shewana3_2893at 3463.406 kb on + strand, within Shewana3_2893at 3463.414 kb on - strand, within Shewana3_2893at 3463.461 kb on - strand, within Shewana3_2893at 3463.513 kb on - strand, within Shewana3_2893

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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3,462,079 + Shewana3_2891 0.71 +0.2
3,462,140 - Shewana3_2891 0.77 +0.9
3,462,518 + -0.9
3,462,611 - Shewana3_2892 0.17 +0.5
3,462,665 + Shewana3_2892 0.31 +0.6
3,462,665 + Shewana3_2892 0.31 +0.5
3,462,681 - Shewana3_2892 0.35 +0.5
3,463,005 - -1.4
3,463,188 - Shewana3_2893 0.25 -0.0
3,463,379 - Shewana3_2893 0.53 +0.2
3,463,390 + Shewana3_2893 0.55 +0.5
3,463,392 - Shewana3_2893 0.55 -1.6
3,463,392 - Shewana3_2893 0.55 -0.4
3,463,392 - Shewana3_2893 0.55 -2.3
3,463,398 - Shewana3_2893 0.56 -0.2
3,463,398 - Shewana3_2893 0.56 -2.0
3,463,398 - Shewana3_2893 0.56 +0.5
3,463,398 - Shewana3_2893 0.56 -3.8
3,463,398 - Shewana3_2893 0.56 +0.1
3,463,406 + Shewana3_2893 0.57 -1.6
3,463,414 - Shewana3_2893 0.58 -1.8
3,463,461 - Shewana3_2893 0.65 -0.4
3,463,513 - Shewana3_2893 0.73 -1.4

Or see this region's nucleotide sequence