Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2850 and Shewana3_2851 are separated by 271 nucleotides Shewana3_2851 and Shewana3_2852 are separated by 164 nucleotides Shewana3_2852 and Shewana3_2853 are separated by 124 nucleotides
Shewana3_2850: Shewana3_2850 - hypothetical protein (RefSeq), at 3,412,066 to 3,412,542
_2850
Shewana3_2851: Shewana3_2851 - transport-associated (RefSeq), at 3,412,814 to 3,413,362
_2851
Shewana3_2852: Shewana3_2852 - hypothetical protein (RefSeq), at 3,413,527 to 3,413,937
_2852
Shewana3_2853: Shewana3_2853 - hypothetical protein (RefSeq), at 3,414,062 to 3,414,871
_2853
Position (kb)
3412
3413
3414 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3411.824 kb on - strand at 3411.851 kb on - strand at 3412.049 kb on - strand at 3412.395 kb on - strand, within Shewana3_2850 at 3412.423 kb on - strand, within Shewana3_2850 at 3412.459 kb on + strand, within Shewana3_2850 at 3412.514 kb on + strand at 3412.514 kb on + strand at 3412.514 kb on + strand at 3412.830 kb on + strand at 3412.888 kb on + strand, within Shewana3_2851 at 3412.888 kb on + strand, within Shewana3_2851 at 3412.960 kb on + strand, within Shewana3_2851 at 3412.961 kb on - strand, within Shewana3_2851 at 3413.049 kb on + strand, within Shewana3_2851 at 3413.249 kb on + strand, within Shewana3_2851 at 3413.299 kb on - strand, within Shewana3_2851 at 3413.373 kb on - strand at 3413.650 kb on - strand, within Shewana3_2852 at 3413.657 kb on - strand, within Shewana3_2852 at 3413.659 kb on + strand, within Shewana3_2852 at 3413.694 kb on + strand, within Shewana3_2852 at 3413.863 kb on + strand, within Shewana3_2852 at 3413.983 kb on - strand at 3414.053 kb on + strand at 3414.287 kb on + strand, within Shewana3_2853 at 3414.358 kb on - strand, within Shewana3_2853
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 3,411,824 - +0.1 3,411,851 - -0.9 3,412,049 - -1.4 3,412,395 - Shewana3_2850 0.69 +0.5 3,412,423 - Shewana3_2850 0.75 +0.1 3,412,459 + Shewana3_2850 0.82 -0.9 3,412,514 + -3.5 3,412,514 + +0.1 3,412,514 + -0.4 3,412,830 + -1.2 3,412,888 + Shewana3_2851 0.13 +0.2 3,412,888 + Shewana3_2851 0.13 +0.1 3,412,960 + Shewana3_2851 0.27 +0.4 3,412,961 - Shewana3_2851 0.27 -0.2 3,413,049 + Shewana3_2851 0.43 +0.2 3,413,249 + Shewana3_2851 0.79 -0.2 3,413,299 - Shewana3_2851 0.88 -1.2 3,413,373 - +0.0 3,413,650 - Shewana3_2852 0.30 -0.6 3,413,657 - Shewana3_2852 0.32 -1.1 3,413,659 + Shewana3_2852 0.32 +0.4 3,413,694 + Shewana3_2852 0.41 +0.1 3,413,863 + Shewana3_2852 0.82 +0.0 3,413,983 - -0.0 3,414,053 + +0.4 3,414,287 + Shewana3_2853 0.28 -1.0 3,414,358 - Shewana3_2853 0.37 -0.5
Or see this region's nucleotide sequence