Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2842 and Shewana3_2843 are separated by 142 nucleotides Shewana3_2843 and Shewana3_2844 are separated by 614 nucleotides
Shewana3_2842: Shewana3_2842 - Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ (RefSeq), at 3,396,584 to 3,402,553
_2842
Shewana3_2843: Shewana3_2843 - 2-nitropropane dioxygenase, NPD (RefSeq), at 3,402,696 to 3,404,342
_2843
Shewana3_2844: Shewana3_2844 - hypothetical protein (RefSeq), at 3,404,957 to 3,405,271
_2844
Position (kb)
3402
3403
3404
3405 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3401.741 kb on + strand, within Shewana3_2842 at 3401.741 kb on + strand, within Shewana3_2842 at 3401.749 kb on - strand, within Shewana3_2842 at 3401.827 kb on + strand, within Shewana3_2842 at 3402.089 kb on + strand at 3402.144 kb on + strand at 3402.145 kb on + strand at 3402.189 kb on - strand at 3402.204 kb on + strand at 3402.314 kb on + strand at 3402.340 kb on - strand at 3402.394 kb on + strand at 3402.488 kb on - strand at 3402.573 kb on - strand at 3402.636 kb on - strand at 3402.688 kb on - strand at 3402.698 kb on - strand at 3402.712 kb on - strand at 3402.853 kb on - strand at 3402.878 kb on - strand, within Shewana3_2843 at 3402.923 kb on - strand, within Shewana3_2843 at 3403.053 kb on + strand, within Shewana3_2843 at 3403.157 kb on - strand, within Shewana3_2843 at 3403.260 kb on - strand, within Shewana3_2843 at 3403.471 kb on - strand, within Shewana3_2843 at 3403.555 kb on - strand, within Shewana3_2843 at 3403.740 kb on + strand, within Shewana3_2843 at 3403.992 kb on - strand, within Shewana3_2843 at 3403.996 kb on + strand, within Shewana3_2843 at 3403.996 kb on + strand, within Shewana3_2843 at 3404.036 kb on + strand, within Shewana3_2843 at 3404.107 kb on - strand, within Shewana3_2843 at 3404.274 kb on - strand at 3404.333 kb on - strand at 3404.358 kb on - strand at 3404.515 kb on + strand at 3404.536 kb on - strand at 3404.536 kb on - strand at 3404.536 kb on - strand at 3404.576 kb on + strand at 3404.747 kb on - strand at 3404.831 kb on - strand at 3405.059 kb on + strand, within Shewana3_2844 at 3405.067 kb on - strand, within Shewana3_2844 at 3405.113 kb on - strand, within Shewana3_2844 at 3405.118 kb on + strand, within Shewana3_2844 at 3405.205 kb on - strand, within Shewana3_2844 at 3405.279 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 3,401,741 + Shewana3_2842 0.86 -0.8 3,401,741 + Shewana3_2842 0.86 -0.1 3,401,749 - Shewana3_2842 0.87 +0.7 3,401,827 + Shewana3_2842 0.88 -0.7 3,402,089 + -1.9 3,402,144 + +1.3 3,402,145 + +1.1 3,402,189 - +1.6 3,402,204 + -0.3 3,402,314 + +0.8 3,402,340 - -1.0 3,402,394 + +0.7 3,402,488 - +1.0 3,402,573 - -0.4 3,402,636 - +0.6 3,402,688 - -0.6 3,402,698 - -0.4 3,402,712 - +1.0 3,402,853 - +1.1 3,402,878 - Shewana3_2843 0.11 +1.1 3,402,923 - Shewana3_2843 0.14 -0.6 3,403,053 + Shewana3_2843 0.22 +0.3 3,403,157 - Shewana3_2843 0.28 +0.6 3,403,260 - Shewana3_2843 0.34 -0.5 3,403,471 - Shewana3_2843 0.47 -0.6 3,403,555 - Shewana3_2843 0.52 +0.6 3,403,740 + Shewana3_2843 0.63 +2.1 3,403,992 - Shewana3_2843 0.79 +1.4 3,403,996 + Shewana3_2843 0.79 -0.2 3,403,996 + Shewana3_2843 0.79 +0.5 3,404,036 + Shewana3_2843 0.81 +0.5 3,404,107 - Shewana3_2843 0.86 +1.1 3,404,274 - +1.0 3,404,333 - -1.1 3,404,358 - -1.4 3,404,515 + +0.7 3,404,536 - -1.4 3,404,536 - +0.3 3,404,536 - -1.5 3,404,576 + +0.3 3,404,747 - -1.3 3,404,831 - +0.1 3,405,059 + Shewana3_2844 0.32 +0.6 3,405,067 - Shewana3_2844 0.35 -0.7 3,405,113 - Shewana3_2844 0.50 -0.4 3,405,118 + Shewana3_2844 0.51 -0.2 3,405,205 - Shewana3_2844 0.79 -0.9 3,405,279 + +0.0
Or see this region's nucleotide sequence