Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2760 and Shewana3_2761 are separated by 427 nucleotides Shewana3_2761 and Shewana3_2762 are separated by 136 nucleotides Shewana3_2762 and Shewana3_2763 are separated by 102 nucleotides
Shewana3_2760: Shewana3_2760 - ABC transporter related (RefSeq), at 3,296,071 to 3,297,711
_2760
Shewana3_2761: Shewana3_2761 - copper-translocating P-type ATPase (RefSeq), at 3,298,139 to 3,300,400
_2761
Shewana3_2762: Shewana3_2762 - MerR family transcriptional regulator (RefSeq), at 3,300,537 to 3,300,926
_2762
Shewana3_2763: Shewana3_2763 - peptidase S9 prolyl oligopeptidase (RefSeq), at 3,301,029 to 3,303,062
_2763
Position (kb)
3298
3299
3300
3301 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3297.390 kb on + strand, within Shewana3_2760 at 3297.413 kb on - strand, within Shewana3_2760 at 3297.680 kb on + strand at 3297.716 kb on + strand at 3297.957 kb on - strand at 3297.983 kb on - strand at 3298.003 kb on + strand at 3298.031 kb on - strand at 3298.153 kb on + strand at 3298.241 kb on - strand at 3298.441 kb on + strand, within Shewana3_2761 at 3298.480 kb on + strand, within Shewana3_2761 at 3298.568 kb on + strand, within Shewana3_2761 at 3298.627 kb on + strand, within Shewana3_2761 at 3298.680 kb on + strand, within Shewana3_2761 at 3298.746 kb on + strand, within Shewana3_2761 at 3298.919 kb on + strand, within Shewana3_2761 at 3298.949 kb on - strand, within Shewana3_2761 at 3298.984 kb on - strand, within Shewana3_2761 at 3299.018 kb on + strand, within Shewana3_2761 at 3299.031 kb on - strand, within Shewana3_2761 at 3299.248 kb on - strand, within Shewana3_2761 at 3299.284 kb on - strand, within Shewana3_2761 at 3299.289 kb on - strand, within Shewana3_2761 at 3299.290 kb on - strand, within Shewana3_2761 at 3299.375 kb on - strand, within Shewana3_2761 at 3299.421 kb on - strand, within Shewana3_2761 at 3299.438 kb on - strand, within Shewana3_2761 at 3299.481 kb on - strand, within Shewana3_2761 at 3299.507 kb on + strand, within Shewana3_2761 at 3299.582 kb on - strand, within Shewana3_2761 at 3299.628 kb on + strand, within Shewana3_2761 at 3299.645 kb on + strand, within Shewana3_2761 at 3299.664 kb on + strand, within Shewana3_2761 at 3299.838 kb on - strand, within Shewana3_2761 at 3299.887 kb on + strand, within Shewana3_2761 at 3299.887 kb on + strand, within Shewana3_2761 at 3299.900 kb on - strand, within Shewana3_2761 at 3299.900 kb on - strand, within Shewana3_2761 at 3299.900 kb on - strand, within Shewana3_2761 at 3299.997 kb on - strand, within Shewana3_2761 at 3300.509 kb on + strand at 3300.567 kb on + strand at 3300.567 kb on + strand at 3300.575 kb on - strand at 3300.619 kb on - strand, within Shewana3_2762 at 3301.138 kb on + strand at 3301.146 kb on - strand at 3301.258 kb on - strand, within Shewana3_2763
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 3,297,390 + Shewana3_2760 0.80 +0.5 3,297,413 - Shewana3_2760 0.82 -3.5 3,297,680 + -1.9 3,297,716 + -0.0 3,297,957 - +0.1 3,297,983 - +0.1 3,298,003 + -1.3 3,298,031 - +0.5 3,298,153 + +0.2 3,298,241 - +0.7 3,298,441 + Shewana3_2761 0.13 +0.0 3,298,480 + Shewana3_2761 0.15 +0.5 3,298,568 + Shewana3_2761 0.19 -1.1 3,298,627 + Shewana3_2761 0.22 -2.4 3,298,680 + Shewana3_2761 0.24 +0.8 3,298,746 + Shewana3_2761 0.27 +0.1 3,298,919 + Shewana3_2761 0.34 +0.5 3,298,949 - Shewana3_2761 0.36 +0.5 3,298,984 - Shewana3_2761 0.37 -0.4 3,299,018 + Shewana3_2761 0.39 +0.5 3,299,031 - Shewana3_2761 0.39 +0.9 3,299,248 - Shewana3_2761 0.49 -0.1 3,299,284 - Shewana3_2761 0.51 +0.5 3,299,289 - Shewana3_2761 0.51 +0.0 3,299,290 - Shewana3_2761 0.51 -0.9 3,299,375 - Shewana3_2761 0.55 -1.3 3,299,421 - Shewana3_2761 0.57 +0.1 3,299,438 - Shewana3_2761 0.57 +0.0 3,299,481 - Shewana3_2761 0.59 +0.7 3,299,507 + Shewana3_2761 0.60 -1.1 3,299,582 - Shewana3_2761 0.64 -1.3 3,299,628 + Shewana3_2761 0.66 +0.3 3,299,645 + Shewana3_2761 0.67 -1.3 3,299,664 + Shewana3_2761 0.67 +0.4 3,299,838 - Shewana3_2761 0.75 -0.1 3,299,887 + Shewana3_2761 0.77 -0.1 3,299,887 + Shewana3_2761 0.77 -1.7 3,299,900 - Shewana3_2761 0.78 -1.5 3,299,900 - Shewana3_2761 0.78 -0.2 3,299,900 - Shewana3_2761 0.78 +0.9 3,299,997 - Shewana3_2761 0.82 +0.6 3,300,509 + +0.6 3,300,567 + +0.9 3,300,567 + +0.1 3,300,575 - -1.4 3,300,619 - Shewana3_2762 0.21 -0.9 3,301,138 + +0.0 3,301,146 - -1.6 3,301,258 - Shewana3_2763 0.11 +0.0
Or see this region's nucleotide sequence