Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2558

Experiment: L-Glutamine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2557 and Shewana3_2558 are separated by 603 nucleotidesShewana3_2558 and Shewana3_2559 are separated by 9 nucleotides Shewana3_2557: Shewana3_2557 - 3-oxoacyl-[acyl-carrier-protein] synthase II (RefSeq), at 3,058,542 to 3,059,780 _2557 Shewana3_2558: Shewana3_2558 - 3-oxoacyl-[acyl-carrier-protein] reductase (RefSeq), at 3,060,384 to 3,061,130 _2558 Shewana3_2559: Shewana3_2559 - [Acyl-carrier-protein] S-malonyltransferase (RefSeq), at 3,061,140 to 3,062,066 _2559 Position (kb) 3060 3061 3062Strain fitness (log2 ratio) -1 0 1at 3059.603 kb on - strand, within Shewana3_2557at 3061.178 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
remove
3,059,603 - Shewana3_2557 0.86 +0.0
3,061,178 - +1.2

Or see this region's nucleotide sequence