Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2457 and Shewana3_2458 are separated by 261 nucleotides Shewana3_2458 and Shewana3_2459 are separated by 208 nucleotides Shewana3_2459 and Shewana3_2460 are separated by 406 nucleotides Shewana3_2460 and Shewana3_2461 are separated by 57 nucleotides
Shewana3_2457: Shewana3_2457 - peptidase M1, membrane alanine aminopeptidase (RefSeq), at 2,945,191 to 2,947,119
_2457
Shewana3_2458: Shewana3_2458 - peptidylprolyl isomerase, FKBP-type (RefSeq), at 2,947,381 to 2,947,869
_2458
Shewana3_2459: Shewana3_2459 - lytic murein transglycosylase (RefSeq), at 2,948,078 to 2,949,370
_2459
Shewana3_2460: Shewana3_2460 - hypothetical protein (RefSeq), at 2,949,777 to 2,950,136
_2460
Shewana3_2461: Shewana3_2461 - hypothetical protein (RefSeq), at 2,950,194 to 2,950,835
_2461
Position (kb)
2948
2949
2950 Strain fitness (log2 ratio)
-2
-1
0
1 at 2947.379 kb on + strand at 2947.379 kb on + strand at 2947.387 kb on - strand at 2947.466 kb on - strand, within Shewana3_2458 at 2947.684 kb on - strand, within Shewana3_2458 at 2947.840 kb on - strand at 2947.847 kb on + strand at 2947.922 kb on - strand at 2947.941 kb on + strand at 2948.105 kb on - strand at 2948.165 kb on - strand at 2948.165 kb on - strand at 2948.254 kb on + strand, within Shewana3_2459 at 2948.432 kb on - strand, within Shewana3_2459 at 2948.687 kb on + strand, within Shewana3_2459 at 2948.710 kb on - strand, within Shewana3_2459 at 2948.760 kb on - strand, within Shewana3_2459 at 2948.843 kb on + strand, within Shewana3_2459 at 2948.843 kb on + strand, within Shewana3_2459 at 2948.901 kb on + strand, within Shewana3_2459 at 2949.082 kb on + strand, within Shewana3_2459 at 2949.130 kb on - strand, within Shewana3_2459 at 2949.166 kb on + strand, within Shewana3_2459 at 2949.166 kb on + strand, within Shewana3_2459 at 2949.748 kb on + strand at 2949.769 kb on + strand at 2949.780 kb on + strand at 2949.825 kb on - strand, within Shewana3_2460 at 2949.952 kb on + strand, within Shewana3_2460 at 2949.981 kb on - strand, within Shewana3_2460 at 2950.015 kb on + strand, within Shewana3_2460 at 2950.078 kb on + strand, within Shewana3_2460 at 2950.120 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 2,947,379 + -0.9 2,947,379 + -0.2 2,947,387 - -1.7 2,947,466 - Shewana3_2458 0.17 -1.5 2,947,684 - Shewana3_2458 0.62 +0.5 2,947,840 - +0.5 2,947,847 + -0.0 2,947,922 - +0.1 2,947,941 + -0.2 2,948,105 - -1.6 2,948,165 - +0.2 2,948,165 - +0.6 2,948,254 + Shewana3_2459 0.14 -0.7 2,948,432 - Shewana3_2459 0.27 -0.2 2,948,687 + Shewana3_2459 0.47 +0.3 2,948,710 - Shewana3_2459 0.49 -2.7 2,948,760 - Shewana3_2459 0.53 -1.2 2,948,843 + Shewana3_2459 0.59 -1.2 2,948,843 + Shewana3_2459 0.59 +0.2 2,948,901 + Shewana3_2459 0.64 -1.1 2,949,082 + Shewana3_2459 0.78 -0.1 2,949,130 - Shewana3_2459 0.81 -1.7 2,949,166 + Shewana3_2459 0.84 +0.5 2,949,166 + Shewana3_2459 0.84 -1.8 2,949,748 + -1.2 2,949,769 + -0.1 2,949,780 + +0.1 2,949,825 - Shewana3_2460 0.13 +0.6 2,949,952 + Shewana3_2460 0.49 -1.5 2,949,981 - Shewana3_2460 0.57 -0.5 2,950,015 + Shewana3_2460 0.66 -0.3 2,950,078 + Shewana3_2460 0.84 -0.3 2,950,120 + -1.0
Or see this region's nucleotide sequence