Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2242

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2241 and Shewana3_2242 are separated by 416 nucleotidesShewana3_2242 and Shewana3_2243 are separated by 50 nucleotides Shewana3_2241: Shewana3_2241 - hypothetical protein (RefSeq), at 2,695,078 to 2,695,512 _2241 Shewana3_2242: Shewana3_2242 - ATPase (RefSeq), at 2,695,929 to 2,696,870 _2242 Shewana3_2243: Shewana3_2243 - hypothetical protein (RefSeq), at 2,696,921 to 2,698,006 _2243 Position (kb) 2695 2696 2697Strain fitness (log2 ratio) -2 -1 0 1at 2694.953 kb on - strandat 2694.970 kb on + strandat 2695.056 kb on + strandat 2695.336 kb on - strand, within Shewana3_2241at 2695.385 kb on + strand, within Shewana3_2241at 2695.394 kb on + strand, within Shewana3_2241at 2695.500 kb on + strandat 2695.559 kb on + strandat 2696.094 kb on + strand, within Shewana3_2242at 2696.124 kb on - strand, within Shewana3_2242at 2696.124 kb on - strand, within Shewana3_2242at 2696.296 kb on - strand, within Shewana3_2242at 2696.556 kb on - strand, within Shewana3_2242at 2696.625 kb on + strand, within Shewana3_2242at 2696.653 kb on + strand, within Shewana3_2242at 2696.707 kb on + strand, within Shewana3_2242at 2696.707 kb on - strand, within Shewana3_2242at 2696.979 kb on + strandat 2696.987 kb on - strandat 2697.017 kb on - strandat 2697.040 kb on - strand, within Shewana3_2243at 2697.048 kb on + strand, within Shewana3_2243at 2697.070 kb on + strand, within Shewana3_2243at 2697.233 kb on + strand, within Shewana3_2243at 2697.629 kb on + strand, within Shewana3_2243at 2697.667 kb on + strand, within Shewana3_2243at 2697.667 kb on + strand, within Shewana3_2243at 2697.667 kb on + strand, within Shewana3_2243at 2697.866 kb on - strand, within Shewana3_2243

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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2,694,953 - +0.0
2,694,970 + +0.3
2,695,056 + +0.3
2,695,336 - Shewana3_2241 0.59 +0.2
2,695,385 + Shewana3_2241 0.71 +0.5
2,695,394 + Shewana3_2241 0.73 +0.2
2,695,500 + +0.7
2,695,559 + -2.0
2,696,094 + Shewana3_2242 0.18 -1.8
2,696,124 - Shewana3_2242 0.21 +0.1
2,696,124 - Shewana3_2242 0.21 -1.7
2,696,296 - Shewana3_2242 0.39 -1.6
2,696,556 - Shewana3_2242 0.67 -0.1
2,696,625 + Shewana3_2242 0.74 -0.9
2,696,653 + Shewana3_2242 0.77 -1.6
2,696,707 + Shewana3_2242 0.83 +0.2
2,696,707 - Shewana3_2242 0.83 +0.7
2,696,979 + +0.6
2,696,987 - +0.3
2,697,017 - +0.5
2,697,040 - Shewana3_2243 0.11 +0.3
2,697,048 + Shewana3_2243 0.12 -1.7
2,697,070 + Shewana3_2243 0.14 -1.7
2,697,233 + Shewana3_2243 0.29 -0.5
2,697,629 + Shewana3_2243 0.65 +0.3
2,697,667 + Shewana3_2243 0.69 -0.2
2,697,667 + Shewana3_2243 0.69 -0.1
2,697,667 + Shewana3_2243 0.69 -0.6
2,697,866 - Shewana3_2243 0.87 +0.1

Or see this region's nucleotide sequence