Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2231

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2229 and Shewana3_2230 are separated by 247 nucleotidesShewana3_2230 and Shewana3_2231 overlap by 1 nucleotidesShewana3_2231 and Shewana3_2232 are separated by 703 nucleotides Shewana3_2229: Shewana3_2229 - peptidase S9 prolyl oligopeptidase (RefSeq), at 2,679,951 to 2,682,044 _2229 Shewana3_2230: Shewana3_2230 - MarR family transcriptional regulator (RefSeq), at 2,682,292 to 2,682,753 _2230 Shewana3_2231: Shewana3_2231 - cation diffusion facilitator family transporter (RefSeq), at 2,682,753 to 2,684,003 _2231 Shewana3_2232: Shewana3_2232 - lactoylglutathione lyase (RefSeq), at 2,684,707 to 2,685,117 _2232 Position (kb) 2682 2683 2684 2685Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2682.079 kb on - strandat 2682.342 kb on + strand, within Shewana3_2230at 2682.350 kb on - strand, within Shewana3_2230at 2682.374 kb on - strand, within Shewana3_2230at 2682.480 kb on - strand, within Shewana3_2230at 2682.589 kb on - strand, within Shewana3_2230at 2682.596 kb on - strand, within Shewana3_2230at 2682.685 kb on + strand, within Shewana3_2230at 2683.039 kb on + strand, within Shewana3_2231at 2683.150 kb on - strand, within Shewana3_2231at 2683.249 kb on - strand, within Shewana3_2231at 2683.416 kb on - strand, within Shewana3_2231at 2683.537 kb on - strand, within Shewana3_2231at 2683.605 kb on - strand, within Shewana3_2231at 2683.655 kb on - strand, within Shewana3_2231at 2683.673 kb on - strand, within Shewana3_2231at 2683.686 kb on + strand, within Shewana3_2231at 2683.694 kb on - strand, within Shewana3_2231at 2683.826 kb on - strand, within Shewana3_2231at 2683.958 kb on + strandat 2683.966 kb on - strandat 2683.966 kb on - strandat 2684.216 kb on + strandat 2684.405 kb on - strandat 2684.472 kb on - strandat 2684.716 kb on + strandat 2684.731 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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2,682,079 - -1.6
2,682,342 + Shewana3_2230 0.11 +1.0
2,682,350 - Shewana3_2230 0.13 -1.8
2,682,374 - Shewana3_2230 0.18 -0.5
2,682,480 - Shewana3_2230 0.41 +0.8
2,682,589 - Shewana3_2230 0.64 +0.3
2,682,596 - Shewana3_2230 0.66 -1.7
2,682,685 + Shewana3_2230 0.85 +0.9
2,683,039 + Shewana3_2231 0.23 -3.0
2,683,150 - Shewana3_2231 0.32 -5.7
2,683,249 - Shewana3_2231 0.40 -5.1
2,683,416 - Shewana3_2231 0.53 -2.2
2,683,537 - Shewana3_2231 0.63 -4.9
2,683,605 - Shewana3_2231 0.68 -4.2
2,683,655 - Shewana3_2231 0.72 -2.7
2,683,673 - Shewana3_2231 0.74 -5.2
2,683,686 + Shewana3_2231 0.75 -4.5
2,683,694 - Shewana3_2231 0.75 -4.6
2,683,826 - Shewana3_2231 0.86 -4.6
2,683,958 + -4.7
2,683,966 - -4.8
2,683,966 - -4.0
2,684,216 + -1.5
2,684,405 - +0.1
2,684,472 - -1.3
2,684,716 + -1.3
2,684,731 - -0.5

Or see this region's nucleotide sequence