Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2229 and Shewana3_2230 are separated by 247 nucleotides Shewana3_2230 and Shewana3_2231 overlap by 1 nucleotides Shewana3_2231 and Shewana3_2232 are separated by 703 nucleotides
Shewana3_2229: Shewana3_2229 - peptidase S9 prolyl oligopeptidase (RefSeq), at 2,679,951 to 2,682,044
_2229
Shewana3_2230: Shewana3_2230 - MarR family transcriptional regulator (RefSeq), at 2,682,292 to 2,682,753
_2230
Shewana3_2231: Shewana3_2231 - cation diffusion facilitator family transporter (RefSeq), at 2,682,753 to 2,684,003
_2231
Shewana3_2232: Shewana3_2232 - lactoylglutathione lyase (RefSeq), at 2,684,707 to 2,685,117
_2232
Position (kb)
2682
2683
2684
2685 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2682.079 kb on - strand at 2682.342 kb on + strand, within Shewana3_2230 at 2682.350 kb on - strand, within Shewana3_2230 at 2682.374 kb on - strand, within Shewana3_2230 at 2682.480 kb on - strand, within Shewana3_2230 at 2682.589 kb on - strand, within Shewana3_2230 at 2682.596 kb on - strand, within Shewana3_2230 at 2682.685 kb on + strand, within Shewana3_2230 at 2683.039 kb on + strand, within Shewana3_2231 at 2683.150 kb on - strand, within Shewana3_2231 at 2683.249 kb on - strand, within Shewana3_2231 at 2683.416 kb on - strand, within Shewana3_2231 at 2683.537 kb on - strand, within Shewana3_2231 at 2683.605 kb on - strand, within Shewana3_2231 at 2683.655 kb on - strand, within Shewana3_2231 at 2683.673 kb on - strand, within Shewana3_2231 at 2683.686 kb on + strand, within Shewana3_2231 at 2683.694 kb on - strand, within Shewana3_2231 at 2683.826 kb on - strand, within Shewana3_2231 at 2683.958 kb on + strand at 2683.966 kb on - strand at 2683.966 kb on - strand at 2684.216 kb on + strand at 2684.405 kb on - strand at 2684.472 kb on - strand at 2684.716 kb on + strand at 2684.731 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 2,682,079 - -1.6 2,682,342 + Shewana3_2230 0.11 +1.0 2,682,350 - Shewana3_2230 0.13 -1.8 2,682,374 - Shewana3_2230 0.18 -0.5 2,682,480 - Shewana3_2230 0.41 +0.8 2,682,589 - Shewana3_2230 0.64 +0.3 2,682,596 - Shewana3_2230 0.66 -1.7 2,682,685 + Shewana3_2230 0.85 +0.9 2,683,039 + Shewana3_2231 0.23 -3.0 2,683,150 - Shewana3_2231 0.32 -5.7 2,683,249 - Shewana3_2231 0.40 -5.1 2,683,416 - Shewana3_2231 0.53 -2.2 2,683,537 - Shewana3_2231 0.63 -4.9 2,683,605 - Shewana3_2231 0.68 -4.2 2,683,655 - Shewana3_2231 0.72 -2.7 2,683,673 - Shewana3_2231 0.74 -5.2 2,683,686 + Shewana3_2231 0.75 -4.5 2,683,694 - Shewana3_2231 0.75 -4.6 2,683,826 - Shewana3_2231 0.86 -4.6 2,683,958 + -4.7 2,683,966 - -4.8 2,683,966 - -4.0 2,684,216 + -1.5 2,684,405 - +0.1 2,684,472 - -1.3 2,684,716 + -1.3 2,684,731 - -0.5
Or see this region's nucleotide sequence