Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2068 and Shewana3_2069 are separated by 109 nucleotides Shewana3_2069 and Shewana3_2070 are separated by 149 nucleotides
Shewana3_2068: Shewana3_2068 - GntR family transcriptional regulator (RefSeq), at 2,475,530 to 2,476,246
_2068
Shewana3_2069: Shewana3_2069 - glycoside hydrolase family protein (RefSeq), at 2,476,356 to 2,477,303
_2069
Shewana3_2070: Shewana3_2070 - L-arabonate dehydratase (EC 4.2.1.25) (from data) , at 2,477,453 to 2,479,213
_2070
Position (kb)
2476
2477
2478 Strain fitness (log2 ratio)
-1
0
1 at 2475.367 kb on - strand at 2475.513 kb on - strand at 2475.563 kb on + strand at 2475.801 kb on + strand, within Shewana3_2068 at 2475.903 kb on + strand, within Shewana3_2068 at 2476.059 kb on + strand, within Shewana3_2068 at 2476.391 kb on - strand at 2477.034 kb on - strand, within Shewana3_2069 at 2477.072 kb on - strand, within Shewana3_2069 at 2477.521 kb on + strand at 2477.647 kb on + strand, within Shewana3_2070 at 2477.944 kb on + strand, within Shewana3_2070 at 2477.950 kb on + strand, within Shewana3_2070 at 2477.952 kb on - strand, within Shewana3_2070 at 2478.094 kb on + strand, within Shewana3_2070 at 2478.117 kb on + strand, within Shewana3_2070 at 2478.287 kb on + strand, within Shewana3_2070
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 2,475,367 - -0.3 2,475,513 - -0.3 2,475,563 + -0.1 2,475,801 + Shewana3_2068 0.38 -0.6 2,475,903 + Shewana3_2068 0.52 -0.1 2,476,059 + Shewana3_2068 0.74 -0.3 2,476,391 - -0.2 2,477,034 - Shewana3_2069 0.72 +0.5 2,477,072 - Shewana3_2069 0.76 +0.6 2,477,521 + +0.1 2,477,647 + Shewana3_2070 0.11 +0.6 2,477,944 + Shewana3_2070 0.28 -1.0 2,477,950 + Shewana3_2070 0.28 +0.4 2,477,952 - Shewana3_2070 0.28 +0.6 2,478,094 + Shewana3_2070 0.36 -1.4 2,478,117 + Shewana3_2070 0.38 +0.1 2,478,287 + Shewana3_2070 0.47 +0.6
Or see this region's nucleotide sequence