Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1839 and Shewana3_1840 are separated by 112 nucleotides Shewana3_1840 and Shewana3_1842 are separated by 198 nucleotides Shewana3_1842 and Shewana3_1843 are separated by 152 nucleotides
Shewana3_1839: Shewana3_1839 - peptidase S1 and S6, chymotrypsin/Hap (RefSeq), at 2,181,132 to 2,181,974
_1839
Shewana3_1840: Shewana3_1840 - no description, at 2,182,087 to 2,182,728
_1840
Shewana3_1842: Shewana3_1842 - hypothetical protein (RefSeq), at 2,182,927 to 2,183,268
_1842
Shewana3_1843: Shewana3_1843 - hypothetical protein (RefSeq), at 2,183,421 to 2,183,771
_1843
Position (kb)
2182
2183 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2181.415 kb on + strand, within Shewana3_1839 at 2181.472 kb on - strand, within Shewana3_1839 at 2181.757 kb on + strand, within Shewana3_1839 at 2181.767 kb on + strand, within Shewana3_1839 at 2182.031 kb on + strand at 2182.275 kb on + strand, within Shewana3_1840 at 2182.564 kb on + strand, within Shewana3_1840 at 2182.572 kb on - strand, within Shewana3_1840 at 2182.767 kb on - strand at 2183.188 kb on - strand, within Shewana3_1842 at 2183.197 kb on + strand, within Shewana3_1842 at 2183.253 kb on + strand at 2183.598 kb on - strand, within Shewana3_1843
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 2,181,415 + Shewana3_1839 0.34 -2.5 2,181,472 - Shewana3_1839 0.40 -1.9 2,181,757 + Shewana3_1839 0.74 -1.8 2,181,767 + Shewana3_1839 0.75 +0.2 2,182,031 + -2.4 2,182,275 + Shewana3_1840 0.29 +0.7 2,182,564 + Shewana3_1840 0.74 +0.1 2,182,572 - Shewana3_1840 0.76 +1.0 2,182,767 - -1.1 2,183,188 - Shewana3_1842 0.76 +0.2 2,183,197 + Shewana3_1842 0.79 -1.1 2,183,253 + +1.8 2,183,598 - Shewana3_1843 0.50 +0.6
Or see this region's nucleotide sequence