Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1776 and Shewana3_1777 are separated by 275 nucleotides Shewana3_1777 and Shewana3_1778 are separated by 28 nucleotides Shewana3_1778 and pepN are separated by 85 nucleotides
Shewana3_1776: Shewana3_1776 - putative GAF sensor protein (RefSeq), at 2,091,072 to 2,091,530
_1776
Shewana3_1777: Shewana3_1777 - putative solute/DNA competence effector (RefSeq), at 2,091,806 to 2,092,450
_1777
Shewana3_1778: Shewana3_1778 - carboxy-terminal protease (RefSeq), at 2,092,479 to 2,094,530
_1778
Shewana3_1779: pepN - aminopeptidase N (RefSeq), at 2,094,616 to 2,097,165
pepN
Position (kb)
2092
2093
2094
2095 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2091.567 kb on + strand at 2091.586 kb on - strand at 2091.629 kb on - strand at 2091.725 kb on + strand at 2091.954 kb on + strand, within Shewana3_1777 at 2092.047 kb on + strand, within Shewana3_1777 at 2092.076 kb on + strand, within Shewana3_1777 at 2092.402 kb on + strand at 2092.851 kb on + strand, within Shewana3_1778 at 2092.889 kb on + strand, within Shewana3_1778 at 2093.561 kb on + strand, within Shewana3_1778 at 2093.679 kb on + strand, within Shewana3_1778 at 2093.840 kb on + strand, within Shewana3_1778 at 2094.047 kb on + strand, within Shewana3_1778 at 2094.047 kb on + strand, within Shewana3_1778 at 2094.047 kb on + strand, within Shewana3_1778 at 2094.181 kb on + strand, within Shewana3_1778 at 2094.777 kb on - strand at 2095.225 kb on - strand, within pepN at 2095.274 kb on + strand, within pepN at 2095.427 kb on - strand, within pepN
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 2,091,567 + +0.9 2,091,586 - +0.2 2,091,629 - +1.0 2,091,725 + -0.1 2,091,954 + Shewana3_1777 0.23 -1.8 2,092,047 + Shewana3_1777 0.37 +0.1 2,092,076 + Shewana3_1777 0.42 -0.5 2,092,402 + -0.1 2,092,851 + Shewana3_1778 0.18 +1.4 2,092,889 + Shewana3_1778 0.20 +1.2 2,093,561 + Shewana3_1778 0.53 +2.0 2,093,679 + Shewana3_1778 0.58 +1.1 2,093,840 + Shewana3_1778 0.66 +1.0 2,094,047 + Shewana3_1778 0.76 +1.5 2,094,047 + Shewana3_1778 0.76 +1.1 2,094,047 + Shewana3_1778 0.76 -0.3 2,094,181 + Shewana3_1778 0.83 +1.2 2,094,777 - +1.1 2,095,225 - pepN Shewana3_1779 0.24 +0.6 2,095,274 + pepN Shewana3_1779 0.26 -1.1 2,095,427 - pepN Shewana3_1779 0.32 -0.0
Or see this region's nucleotide sequence