Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1702 and Shewana3_1703 overlap by 4 nucleotides Shewana3_1703 and Shewana3_1704 are separated by 12 nucleotides
Shewana3_1702: Shewana3_1702 - acriflavin resistance protein (RefSeq), at 1,999,832 to 2,002,888
_1702
Shewana3_1703: Shewana3_1703 - acriflavin resistance protein (RefSeq), at 2,002,885 to 2,006,148
_1703
Shewana3_1704: Shewana3_1704 - RND family efflux transporter MFP subunit (RefSeq), at 2,006,161 to 2,007,225
_1704
Position (kb)
2002
2003
2004
2005
2006
2007 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2002.076 kb on - strand, within Shewana3_1702 at 2002.167 kb on + strand, within Shewana3_1702 at 2002.260 kb on - strand, within Shewana3_1702 at 2002.389 kb on + strand, within Shewana3_1702 at 2002.391 kb on - strand, within Shewana3_1702 at 2002.426 kb on + strand, within Shewana3_1702 at 2002.630 kb on + strand at 2002.638 kb on - strand at 2002.926 kb on + strand at 2002.971 kb on - strand at 2002.972 kb on - strand at 2002.972 kb on - strand at 2002.972 kb on - strand at 2003.062 kb on + strand at 2003.142 kb on - strand at 2003.338 kb on + strand, within Shewana3_1703 at 2003.407 kb on + strand, within Shewana3_1703 at 2003.547 kb on + strand, within Shewana3_1703 at 2003.563 kb on + strand, within Shewana3_1703 at 2003.660 kb on - strand, within Shewana3_1703 at 2003.827 kb on - strand at 2003.983 kb on - strand, within Shewana3_1703 at 2004.217 kb on - strand, within Shewana3_1703 at 2004.359 kb on - strand, within Shewana3_1703 at 2004.512 kb on - strand, within Shewana3_1703 at 2004.680 kb on - strand, within Shewana3_1703 at 2004.727 kb on + strand, within Shewana3_1703 at 2004.767 kb on + strand, within Shewana3_1703 at 2004.842 kb on - strand, within Shewana3_1703 at 2005.178 kb on - strand, within Shewana3_1703 at 2005.237 kb on - strand, within Shewana3_1703 at 2005.311 kb on + strand, within Shewana3_1703 at 2005.347 kb on + strand, within Shewana3_1703 at 2005.347 kb on + strand, within Shewana3_1703 at 2005.347 kb on + strand, within Shewana3_1703 at 2005.347 kb on + strand, within Shewana3_1703 at 2005.703 kb on + strand, within Shewana3_1703 at 2005.728 kb on + strand, within Shewana3_1703 at 2005.758 kb on + strand, within Shewana3_1703 at 2005.835 kb on - strand at 2005.835 kb on - strand at 2005.868 kb on - strand at 2005.926 kb on + strand at 2006.025 kb on + strand at 2006.392 kb on - strand, within Shewana3_1704 at 2006.586 kb on - strand, within Shewana3_1704
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 2,002,076 - Shewana3_1702 0.73 +0.8 2,002,167 + Shewana3_1702 0.76 -1.6 2,002,260 - Shewana3_1702 0.79 -1.4 2,002,389 + Shewana3_1702 0.84 +0.8 2,002,391 - Shewana3_1702 0.84 +0.5 2,002,426 + Shewana3_1702 0.85 +0.1 2,002,630 + +0.2 2,002,638 - -1.1 2,002,926 + -0.2 2,002,971 - -0.4 2,002,972 - -1.5 2,002,972 - +0.7 2,002,972 - -0.5 2,003,062 + +0.4 2,003,142 - +0.2 2,003,338 + Shewana3_1703 0.14 -0.2 2,003,407 + Shewana3_1703 0.16 -0.2 2,003,547 + Shewana3_1703 0.20 +0.1 2,003,563 + Shewana3_1703 0.21 -1.4 2,003,660 - Shewana3_1703 0.24 -2.6 2,003,827 - -0.4 2,003,983 - Shewana3_1703 0.34 +0.2 2,004,217 - Shewana3_1703 0.41 +1.2 2,004,359 - Shewana3_1703 0.45 +0.3 2,004,512 - Shewana3_1703 0.50 -1.5 2,004,680 - Shewana3_1703 0.55 +0.0 2,004,727 + Shewana3_1703 0.56 -1.7 2,004,767 + Shewana3_1703 0.58 -0.6 2,004,842 - Shewana3_1703 0.60 -2.4 2,005,178 - Shewana3_1703 0.70 -0.7 2,005,237 - Shewana3_1703 0.72 +0.2 2,005,311 + Shewana3_1703 0.74 -2.0 2,005,347 + Shewana3_1703 0.75 -1.3 2,005,347 + Shewana3_1703 0.75 +0.3 2,005,347 + Shewana3_1703 0.75 -2.9 2,005,347 + Shewana3_1703 0.75 -0.2 2,005,703 + Shewana3_1703 0.86 +0.2 2,005,728 + Shewana3_1703 0.87 -1.8 2,005,758 + Shewana3_1703 0.88 -0.5 2,005,835 - -1.5 2,005,835 - +0.5 2,005,868 - +0.6 2,005,926 + +0.3 2,006,025 + -2.6 2,006,392 - Shewana3_1704 0.22 +1.2 2,006,586 - Shewana3_1704 0.40 -1.2
Or see this region's nucleotide sequence