Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1703

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1702 and Shewana3_1703 overlap by 4 nucleotidesShewana3_1703 and Shewana3_1704 are separated by 12 nucleotides Shewana3_1702: Shewana3_1702 - acriflavin resistance protein (RefSeq), at 1,999,832 to 2,002,888 _1702 Shewana3_1703: Shewana3_1703 - acriflavin resistance protein (RefSeq), at 2,002,885 to 2,006,148 _1703 Shewana3_1704: Shewana3_1704 - RND family efflux transporter MFP subunit (RefSeq), at 2,006,161 to 2,007,225 _1704 Position (kb) 2002 2003 2004 2005 2006 2007Strain fitness (log2 ratio) -3 -2 -1 0 1at 2002.076 kb on - strand, within Shewana3_1702at 2002.167 kb on + strand, within Shewana3_1702at 2002.260 kb on - strand, within Shewana3_1702at 2002.389 kb on + strand, within Shewana3_1702at 2002.391 kb on - strand, within Shewana3_1702at 2002.426 kb on + strand, within Shewana3_1702at 2002.630 kb on + strandat 2002.638 kb on - strandat 2002.926 kb on + strandat 2002.971 kb on - strandat 2002.972 kb on - strandat 2002.972 kb on - strandat 2002.972 kb on - strandat 2003.062 kb on + strandat 2003.142 kb on - strandat 2003.338 kb on + strand, within Shewana3_1703at 2003.407 kb on + strand, within Shewana3_1703at 2003.547 kb on + strand, within Shewana3_1703at 2003.563 kb on + strand, within Shewana3_1703at 2003.660 kb on - strand, within Shewana3_1703at 2003.827 kb on - strandat 2003.983 kb on - strand, within Shewana3_1703at 2004.217 kb on - strand, within Shewana3_1703at 2004.359 kb on - strand, within Shewana3_1703at 2004.512 kb on - strand, within Shewana3_1703at 2004.680 kb on - strand, within Shewana3_1703at 2004.727 kb on + strand, within Shewana3_1703at 2004.767 kb on + strand, within Shewana3_1703at 2004.842 kb on - strand, within Shewana3_1703at 2005.178 kb on - strand, within Shewana3_1703at 2005.237 kb on - strand, within Shewana3_1703at 2005.311 kb on + strand, within Shewana3_1703at 2005.347 kb on + strand, within Shewana3_1703at 2005.347 kb on + strand, within Shewana3_1703at 2005.347 kb on + strand, within Shewana3_1703at 2005.347 kb on + strand, within Shewana3_1703at 2005.703 kb on + strand, within Shewana3_1703at 2005.728 kb on + strand, within Shewana3_1703at 2005.758 kb on + strand, within Shewana3_1703at 2005.835 kb on - strandat 2005.835 kb on - strandat 2005.868 kb on - strandat 2005.926 kb on + strandat 2006.025 kb on + strandat 2006.392 kb on - strand, within Shewana3_1704at 2006.586 kb on - strand, within Shewana3_1704

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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2,002,076 - Shewana3_1702 0.73 +0.8
2,002,167 + Shewana3_1702 0.76 -1.6
2,002,260 - Shewana3_1702 0.79 -1.4
2,002,389 + Shewana3_1702 0.84 +0.8
2,002,391 - Shewana3_1702 0.84 +0.5
2,002,426 + Shewana3_1702 0.85 +0.1
2,002,630 + +0.2
2,002,638 - -1.1
2,002,926 + -0.2
2,002,971 - -0.4
2,002,972 - -1.5
2,002,972 - +0.7
2,002,972 - -0.5
2,003,062 + +0.4
2,003,142 - +0.2
2,003,338 + Shewana3_1703 0.14 -0.2
2,003,407 + Shewana3_1703 0.16 -0.2
2,003,547 + Shewana3_1703 0.20 +0.1
2,003,563 + Shewana3_1703 0.21 -1.4
2,003,660 - Shewana3_1703 0.24 -2.6
2,003,827 - -0.4
2,003,983 - Shewana3_1703 0.34 +0.2
2,004,217 - Shewana3_1703 0.41 +1.2
2,004,359 - Shewana3_1703 0.45 +0.3
2,004,512 - Shewana3_1703 0.50 -1.5
2,004,680 - Shewana3_1703 0.55 +0.0
2,004,727 + Shewana3_1703 0.56 -1.7
2,004,767 + Shewana3_1703 0.58 -0.6
2,004,842 - Shewana3_1703 0.60 -2.4
2,005,178 - Shewana3_1703 0.70 -0.7
2,005,237 - Shewana3_1703 0.72 +0.2
2,005,311 + Shewana3_1703 0.74 -2.0
2,005,347 + Shewana3_1703 0.75 -1.3
2,005,347 + Shewana3_1703 0.75 +0.3
2,005,347 + Shewana3_1703 0.75 -2.9
2,005,347 + Shewana3_1703 0.75 -0.2
2,005,703 + Shewana3_1703 0.86 +0.2
2,005,728 + Shewana3_1703 0.87 -1.8
2,005,758 + Shewana3_1703 0.88 -0.5
2,005,835 - -1.5
2,005,835 - +0.5
2,005,868 - +0.6
2,005,926 + +0.3
2,006,025 + -2.6
2,006,392 - Shewana3_1704 0.22 +1.2
2,006,586 - Shewana3_1704 0.40 -1.2

Or see this region's nucleotide sequence