Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1283

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1282 and Shewana3_1283 overlap by 4 nucleotidesShewana3_1283 and Shewana3_1284 overlap by 4 nucleotidesShewana3_1284 and Shewana3_1285 are separated by 10 nucleotides Shewana3_1282: Shewana3_1282 - type II secretion system protein E (RefSeq), at 1,493,533 to 1,494,603 _1282 Shewana3_1283: Shewana3_1283 - conjugal transfer protein TrbC (RefSeq), at 1,494,600 to 1,494,986 _1283 Shewana3_1284: Shewana3_1284 - putative conjugal transfer trbD transmembrane protein (RefSeq), at 1,494,983 to 1,495,252 _1284 Shewana3_1285: Shewana3_1285 - conjugal transfer ATPase TrbE (RefSeq), at 1,495,263 to 1,497,713 _1285 Position (kb) 1494 1495Strain fitness (log2 ratio) -2 -1 0 1at 1493.658 kb on - strand, within Shewana3_1282at 1493.681 kb on - strand, within Shewana3_1282at 1493.740 kb on - strand, within Shewana3_1282at 1493.790 kb on - strand, within Shewana3_1282at 1493.927 kb on + strand, within Shewana3_1282at 1493.941 kb on - strand, within Shewana3_1282at 1494.051 kb on + strand, within Shewana3_1282at 1494.423 kb on + strand, within Shewana3_1282at 1494.481 kb on - strand, within Shewana3_1282at 1494.558 kb on - strandat 1494.668 kb on + strand, within Shewana3_1283at 1494.685 kb on + strand, within Shewana3_1283at 1495.041 kb on + strand, within Shewana3_1284at 1495.049 kb on - strand, within Shewana3_1284at 1495.124 kb on + strand, within Shewana3_1284at 1495.144 kb on + strand, within Shewana3_1284at 1495.371 kb on - strandat 1495.398 kb on + strandat 1495.398 kb on + strandat 1495.398 kb on + strandat 1495.406 kb on - strandat 1495.406 kb on - strandat 1495.422 kb on + strandat 1495.763 kb on + strand, within Shewana3_1285at 1495.771 kb on - strand, within Shewana3_1285at 1495.802 kb on - strand, within Shewana3_1285at 1495.977 kb on + strand, within Shewana3_1285

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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1,493,658 - Shewana3_1282 0.12 +0.5
1,493,681 - Shewana3_1282 0.14 -0.9
1,493,740 - Shewana3_1282 0.19 +0.3
1,493,790 - Shewana3_1282 0.24 -2.1
1,493,927 + Shewana3_1282 0.37 -1.2
1,493,941 - Shewana3_1282 0.38 -1.6
1,494,051 + Shewana3_1282 0.48 -0.7
1,494,423 + Shewana3_1282 0.83 +0.1
1,494,481 - Shewana3_1282 0.89 -1.7
1,494,558 - -0.1
1,494,668 + Shewana3_1283 0.18 -2.2
1,494,685 + Shewana3_1283 0.22 +0.3
1,495,041 + Shewana3_1284 0.21 +0.1
1,495,049 - Shewana3_1284 0.24 -1.6
1,495,124 + Shewana3_1284 0.52 -1.3
1,495,144 + Shewana3_1284 0.60 +0.2
1,495,371 - -1.7
1,495,398 + -0.1
1,495,398 + +0.2
1,495,398 + +0.1
1,495,406 - +0.2
1,495,406 - -0.2
1,495,422 + +0.3
1,495,763 + Shewana3_1285 0.20 +0.4
1,495,771 - Shewana3_1285 0.21 -0.2
1,495,802 - Shewana3_1285 0.22 -0.4
1,495,977 + Shewana3_1285 0.29 +0.2

Or see this region's nucleotide sequence