Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1250 and Shewana3_1251 are separated by 14 nucleotides Shewana3_1251 and Shewana3_1252 are separated by 304 nucleotides Shewana3_1252 and Shewana3_1253 are separated by 43 nucleotides
Shewana3_1250: Shewana3_1250 - integrase catalytic subunit (RefSeq), at 1,463,938 to 1,465,479
_1250
Shewana3_1251: Shewana3_1251 - IstB ATP binding domain-containing protein (RefSeq), at 1,465,494 to 1,466,249
_1251
Shewana3_1252: Shewana3_1252 - DNA repair protein RadC (RefSeq), at 1,466,554 to 1,467,063
_1252
Shewana3_1253: Shewana3_1253 - hypothetical protein (RefSeq), at 1,467,107 to 1,467,916
_1253
Position (kb)
1465
1466
1467 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1464.502 kb on - strand, within Shewana3_1250 at 1464.582 kb on + strand, within Shewana3_1250 at 1464.707 kb on - strand, within Shewana3_1250 at 1464.718 kb on - strand, within Shewana3_1250 at 1464.730 kb on - strand, within Shewana3_1250 at 1464.869 kb on + strand, within Shewana3_1250 at 1464.956 kb on - strand, within Shewana3_1250 at 1464.979 kb on - strand, within Shewana3_1250 at 1464.992 kb on - strand, within Shewana3_1250 at 1465.064 kb on + strand, within Shewana3_1250 at 1465.137 kb on + strand, within Shewana3_1250 at 1465.271 kb on + strand, within Shewana3_1250 at 1465.279 kb on - strand, within Shewana3_1250 at 1465.284 kb on - strand, within Shewana3_1250 at 1465.348 kb on + strand at 1465.419 kb on + strand at 1465.422 kb on - strand at 1465.516 kb on + strand at 1465.652 kb on + strand, within Shewana3_1251 at 1465.652 kb on + strand, within Shewana3_1251 at 1465.660 kb on - strand, within Shewana3_1251 at 1465.692 kb on + strand, within Shewana3_1251 at 1465.724 kb on - strand, within Shewana3_1251 at 1465.735 kb on + strand, within Shewana3_1251 at 1465.829 kb on + strand, within Shewana3_1251 at 1465.972 kb on + strand, within Shewana3_1251 at 1465.972 kb on + strand, within Shewana3_1251 at 1465.980 kb on - strand, within Shewana3_1251 at 1466.004 kb on - strand, within Shewana3_1251 at 1466.017 kb on + strand, within Shewana3_1251 at 1466.119 kb on + strand, within Shewana3_1251 at 1466.148 kb on + strand, within Shewana3_1251 at 1466.284 kb on - strand at 1466.294 kb on + strand at 1466.330 kb on + strand at 1466.382 kb on + strand at 1466.382 kb on + strand at 1466.382 kb on + strand at 1466.432 kb on + strand at 1466.691 kb on + strand, within Shewana3_1252 at 1466.700 kb on - strand, within Shewana3_1252 at 1466.719 kb on + strand, within Shewana3_1252 at 1466.729 kb on + strand, within Shewana3_1252 at 1466.767 kb on + strand, within Shewana3_1252 at 1466.814 kb on + strand, within Shewana3_1252 at 1467.032 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 1,464,502 - Shewana3_1250 0.37 +0.6 1,464,582 + Shewana3_1250 0.42 +0.1 1,464,707 - Shewana3_1250 0.50 +0.7 1,464,718 - Shewana3_1250 0.51 -1.5 1,464,730 - Shewana3_1250 0.51 -1.6 1,464,869 + Shewana3_1250 0.60 +0.3 1,464,956 - Shewana3_1250 0.66 -1.1 1,464,979 - Shewana3_1250 0.68 -1.1 1,464,992 - Shewana3_1250 0.68 +0.9 1,465,064 + Shewana3_1250 0.73 -3.4 1,465,137 + Shewana3_1250 0.78 +0.2 1,465,271 + Shewana3_1250 0.86 +0.2 1,465,279 - Shewana3_1250 0.87 -0.3 1,465,284 - Shewana3_1250 0.87 +0.3 1,465,348 + +0.3 1,465,419 + -1.0 1,465,422 - -0.1 1,465,516 + +0.2 1,465,652 + Shewana3_1251 0.21 +0.3 1,465,652 + Shewana3_1251 0.21 +0.2 1,465,660 - Shewana3_1251 0.22 +0.6 1,465,692 + Shewana3_1251 0.26 -0.1 1,465,724 - Shewana3_1251 0.30 -1.1 1,465,735 + Shewana3_1251 0.32 +0.2 1,465,829 + Shewana3_1251 0.44 -1.5 1,465,972 + Shewana3_1251 0.63 +0.4 1,465,972 + Shewana3_1251 0.63 +0.2 1,465,980 - Shewana3_1251 0.64 +0.1 1,466,004 - Shewana3_1251 0.67 +0.6 1,466,017 + Shewana3_1251 0.69 +0.0 1,466,119 + Shewana3_1251 0.83 -2.7 1,466,148 + Shewana3_1251 0.87 +0.2 1,466,284 - +0.3 1,466,294 + +0.2 1,466,330 + -1.8 1,466,382 + -1.1 1,466,382 + +0.5 1,466,382 + -1.4 1,466,432 + +0.1 1,466,691 + Shewana3_1252 0.27 +0.6 1,466,700 - Shewana3_1252 0.29 -0.3 1,466,719 + Shewana3_1252 0.32 +0.3 1,466,729 + Shewana3_1252 0.34 -0.5 1,466,767 + Shewana3_1252 0.42 +0.9 1,466,814 + Shewana3_1252 0.51 +0.9 1,467,032 - -0.4
Or see this region's nucleotide sequence