Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0818 and Shewana3_0819 are separated by 434 nucleotides Shewana3_0819 and Shewana3_0820 are separated by 258 nucleotides
Shewana3_0818: Shewana3_0818 - hypothetical protein (RefSeq), at 946,687 to 947,175
_0818
Shewana3_0819: Shewana3_0819 - L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) <small>(from data)</small>, at 947,610 to 950,804
_0819
Shewana3_0820: Shewana3_0820 - SH3 type 3 domain-containing protein (RefSeq), at 951,063 to 951,611
_0820
Position (kb) 947
948
949
950
951 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 946.726 kb on - strand at 946.809 kb on - strand, within Shewana3_0818 at 946.877 kb on + strand, within Shewana3_0818 at 946.877 kb on - strand, within Shewana3_0818 at 946.959 kb on - strand, within Shewana3_0818 at 947.158 kb on - strand at 947.163 kb on + strand at 947.182 kb on - strand at 947.294 kb on - strand at 947.354 kb on + strand at 947.471 kb on + strand at 947.471 kb on + strand at 947.699 kb on + strand at 947.777 kb on - strand at 947.842 kb on - strand at 948.242 kb on - strand, within Shewana3_0819 at 948.253 kb on + strand, within Shewana3_0819 at 948.266 kb on - strand, within Shewana3_0819 at 948.266 kb on - strand, within Shewana3_0819 at 948.266 kb on - strand, within Shewana3_0819 at 948.281 kb on - strand, within Shewana3_0819 at 948.303 kb on + strand, within Shewana3_0819 at 948.327 kb on - strand, within Shewana3_0819 at 948.504 kb on - strand, within Shewana3_0819 at 948.612 kb on - strand, within Shewana3_0819 at 948.686 kb on - strand, within Shewana3_0819 at 948.783 kb on - strand, within Shewana3_0819 at 948.916 kb on - strand, within Shewana3_0819 at 948.969 kb on + strand, within Shewana3_0819 at 949.122 kb on + strand, within Shewana3_0819 at 949.274 kb on + strand, within Shewana3_0819 at 949.274 kb on + strand, within Shewana3_0819 at 949.293 kb on + strand, within Shewana3_0819 at 949.346 kb on - strand, within Shewana3_0819 at 949.443 kb on + strand, within Shewana3_0819 at 949.629 kb on + strand, within Shewana3_0819 at 949.793 kb on - strand, within Shewana3_0819 at 949.853 kb on + strand, within Shewana3_0819 at 949.972 kb on - strand, within Shewana3_0819 at 950.085 kb on + strand, within Shewana3_0819 at 950.094 kb on - strand, within Shewana3_0819 at 950.570 kb on + strand at 950.787 kb on - strand at 951.485 kb on - strand, within Shewana3_0820 at 951.526 kb on - strand, within Shewana3_0820 at 951.558 kb on + strand at 951.558 kb on + strand at 951.718 kb on - strand at 951.795 kb on + strand at 951.804 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 946,726 - +0.0 946,809 - Shewana3_0818 0.25 +0.2 946,877 + Shewana3_0818 0.39 -1.7 946,877 - Shewana3_0818 0.39 +0.5 946,959 - Shewana3_0818 0.56 +1.0 947,158 - +0.4 947,163 + +0.8 947,182 - +0.7 947,294 - -1.3 947,354 + -0.1 947,471 + -1.1 947,471 + +0.7 947,699 + -1.8 947,777 - +0.5 947,842 - -1.5 948,242 - Shewana3_0819 0.20 +0.5 948,253 + Shewana3_0819 0.20 -0.9 948,266 - Shewana3_0819 0.21 -1.7 948,266 - Shewana3_0819 0.21 -2.1 948,266 - Shewana3_0819 0.21 +0.1 948,281 - Shewana3_0819 0.21 -2.8 948,303 + Shewana3_0819 0.22 +0.2 948,327 - Shewana3_0819 0.22 -0.2 948,504 - Shewana3_0819 0.28 +0.8 948,612 - Shewana3_0819 0.31 -1.1 948,686 - Shewana3_0819 0.34 -0.5 948,783 - Shewana3_0819 0.37 +1.0 948,916 - Shewana3_0819 0.41 +0.2 948,969 + Shewana3_0819 0.43 +0.9 949,122 + Shewana3_0819 0.47 +0.1 949,274 + Shewana3_0819 0.52 -2.0 949,274 + Shewana3_0819 0.52 -0.0 949,293 + Shewana3_0819 0.53 -0.1 949,346 - Shewana3_0819 0.54 +0.7 949,443 + Shewana3_0819 0.57 -0.0 949,629 + Shewana3_0819 0.63 +0.2 949,793 - Shewana3_0819 0.68 -0.2 949,853 + Shewana3_0819 0.70 -1.4 949,972 - Shewana3_0819 0.74 +0.0 950,085 + Shewana3_0819 0.77 -0.6 950,094 - Shewana3_0819 0.78 +0.2 950,570 + +0.1 950,787 - +0.0 951,485 - Shewana3_0820 0.77 -1.7 951,526 - Shewana3_0820 0.84 +0.7 951,558 + +0.9 951,558 + -1.3 951,718 - +0.0 951,795 + +0.8 951,804 - -0.6
Or see this region's nucleotide sequence