Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0806 and Shewana3_0807 are separated by 110 nucleotides Shewana3_0807 and Shewana3_0808 are separated by 67 nucleotides Shewana3_0808 and Shewana3_0809 are separated by 305 nucleotides
Shewana3_0806: Shewana3_0806 - peptidase M19, renal dipeptidase (RefSeq), at 930,005 to 931,168
_0806
Shewana3_0807: Shewana3_0807 - Fe-S metabolism associated SufE (RefSeq), at 931,279 to 931,722
_0807
Shewana3_0808: Shewana3_0808 - cysteine desulfurase (RefSeq), at 931,790 to 933,037
_0808
Shewana3_0809: Shewana3_0809 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 933,343 to 935,043
_0809
Position (kb) 931
932
933
934 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 931.217 kb on + strand at 931.217 kb on + strand at 931.340 kb on + strand, within Shewana3_0807 at 931.394 kb on - strand, within Shewana3_0807 at 931.427 kb on + strand, within Shewana3_0807 at 931.442 kb on + strand, within Shewana3_0807 at 931.458 kb on - strand, within Shewana3_0807 at 931.545 kb on - strand, within Shewana3_0807 at 931.788 kb on + strand at 931.796 kb on - strand at 931.796 kb on - strand at 931.796 kb on - strand at 931.891 kb on + strand at 931.899 kb on - strand at 931.899 kb on - strand at 931.899 kb on - strand at 931.910 kb on + strand at 931.996 kb on + strand, within Shewana3_0808 at 932.042 kb on - strand, within Shewana3_0808 at 932.071 kb on + strand, within Shewana3_0808 at 932.172 kb on - strand, within Shewana3_0808 at 932.511 kb on - strand, within Shewana3_0808 at 932.528 kb on + strand, within Shewana3_0808 at 932.567 kb on - strand, within Shewana3_0808 at 932.583 kb on + strand, within Shewana3_0808 at 932.631 kb on + strand, within Shewana3_0808 at 932.727 kb on - strand, within Shewana3_0808 at 932.873 kb on - strand, within Shewana3_0808 at 932.873 kb on - strand, within Shewana3_0808 at 932.936 kb on - strand at 932.984 kb on + strand at 932.984 kb on + strand at 933.015 kb on - strand at 933.162 kb on - strand at 933.319 kb on + strand at 933.518 kb on - strand, within Shewana3_0809 at 933.520 kb on - strand, within Shewana3_0809 at 933.953 kb on + strand, within Shewana3_0809 at 933.963 kb on + strand, within Shewana3_0809 at 933.963 kb on + strand, within Shewana3_0809 at 933.971 kb on - strand, within Shewana3_0809 at 934.003 kb on - strand, within Shewana3_0809
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 931,217 + +0.1 931,217 + +0.4 931,340 + Shewana3_0807 0.14 +0.0 931,394 - Shewana3_0807 0.26 -1.0 931,427 + Shewana3_0807 0.33 -1.9 931,442 + Shewana3_0807 0.37 -0.5 931,458 - Shewana3_0807 0.40 -0.6 931,545 - Shewana3_0807 0.60 -1.9 931,788 + +0.2 931,796 - -1.9 931,796 - -1.5 931,796 - +0.9 931,891 + +0.3 931,899 - -0.3 931,899 - -0.5 931,899 - -0.2 931,910 + -0.6 931,996 + Shewana3_0808 0.17 -2.0 932,042 - Shewana3_0808 0.20 -0.4 932,071 + Shewana3_0808 0.23 -4.0 932,172 - Shewana3_0808 0.31 +0.2 932,511 - Shewana3_0808 0.58 -2.4 932,528 + Shewana3_0808 0.59 -0.6 932,567 - Shewana3_0808 0.62 -2.0 932,583 + Shewana3_0808 0.64 -2.2 932,631 + Shewana3_0808 0.67 -0.7 932,727 - Shewana3_0808 0.75 -0.7 932,873 - Shewana3_0808 0.87 -0.7 932,873 - Shewana3_0808 0.87 +0.0 932,936 - -0.6 932,984 + -2.2 932,984 + -2.4 933,015 - +0.0 933,162 - +0.6 933,319 + +0.3 933,518 - Shewana3_0809 0.10 +0.1 933,520 - Shewana3_0809 0.10 +0.5 933,953 + Shewana3_0809 0.36 +0.0 933,963 + Shewana3_0809 0.36 +0.6 933,963 + Shewana3_0809 0.36 +0.2 933,971 - Shewana3_0809 0.37 -0.3 934,003 - Shewana3_0809 0.39 -1.3
Or see this region's nucleotide sequence