Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hslO and Shewana3_0149 are separated by 36 nucleotides Shewana3_0149 and Shewana3_0150 are separated by 251 nucleotides Shewana3_0150 and Shewana3_0151 are separated by 24 nucleotides
Shewana3_0148: hslO - Hsp33-like chaperonin (RefSeq), at 172,505 to 173,365
hslO
Shewana3_0149: Shewana3_0149 - RNA-binding S4 domain-containing protein (RefSeq), at 173,402 to 173,800
_0149
Shewana3_0150: Shewana3_0150 - general secretion pathway protein C (RefSeq), at 174,052 to 174,978
_0150
Shewana3_0151: Shewana3_0151 - general secretion pathway protein D (RefSeq), at 175,003 to 177,111
_0151
Position (kb) 174
175 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 173.092 kb on + strand, within hslO at 173.100 kb on - strand, within hslO at 173.151 kb on + strand, within hslO at 173.615 kb on + strand, within Shewana3_0149 at 173.771 kb on - strand at 173.790 kb on - strand at 173.961 kb on - strand at 174.039 kb on - strand at 174.081 kb on + strand at 174.272 kb on + strand, within Shewana3_0150 at 174.335 kb on - strand, within Shewana3_0150 at 174.335 kb on - strand, within Shewana3_0150 at 174.465 kb on + strand, within Shewana3_0150 at 174.473 kb on - strand, within Shewana3_0150 at 174.561 kb on + strand, within Shewana3_0150 at 174.564 kb on - strand, within Shewana3_0150 at 174.694 kb on + strand, within Shewana3_0150 at 174.701 kb on - strand, within Shewana3_0150 at 174.800 kb on + strand, within Shewana3_0150 at 175.055 kb on + strand at 175.103 kb on + strand at 175.169 kb on + strand at 175.208 kb on + strand at 175.208 kb on + strand at 175.216 kb on - strand, within Shewana3_0151 at 175.216 kb on - strand, within Shewana3_0151 at 175.231 kb on - strand, within Shewana3_0151 at 175.264 kb on + strand, within Shewana3_0151 at 175.272 kb on - strand, within Shewana3_0151 at 175.369 kb on + strand, within Shewana3_0151 at 175.407 kb on + strand, within Shewana3_0151 at 175.407 kb on + strand, within Shewana3_0151 at 175.407 kb on + strand, within Shewana3_0151 at 175.415 kb on - strand, within Shewana3_0151 at 175.415 kb on - strand, within Shewana3_0151 at 175.415 kb on - strand, within Shewana3_0151 at 175.493 kb on - strand, within Shewana3_0151 at 175.589 kb on + strand, within Shewana3_0151 at 175.794 kb on + strand, within Shewana3_0151 at 175.802 kb on - strand, within Shewana3_0151 at 175.802 kb on - strand, within Shewana3_0151 at 175.811 kb on - strand, within Shewana3_0151 at 175.953 kb on + strand, within Shewana3_0151
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 173,092 + hslO Shewana3_0148 0.68 +0.8 173,100 - hslO Shewana3_0148 0.69 -1.1 173,151 + hslO Shewana3_0148 0.75 +1.2 173,615 + Shewana3_0149 0.53 +1.0 173,771 - -0.2 173,790 - -1.6 173,961 - -0.1 174,039 - +1.9 174,081 + +3.0 174,272 + Shewana3_0150 0.24 +1.4 174,335 - Shewana3_0150 0.31 +1.4 174,335 - Shewana3_0150 0.31 +2.4 174,465 + Shewana3_0150 0.45 +3.2 174,473 - Shewana3_0150 0.45 +2.8 174,561 + Shewana3_0150 0.55 +3.1 174,564 - Shewana3_0150 0.55 +1.2 174,694 + Shewana3_0150 0.69 +0.7 174,701 - Shewana3_0150 0.70 +1.7 174,800 + Shewana3_0150 0.81 +2.0 175,055 + +3.7 175,103 + +4.0 175,169 + +3.9 175,208 + +3.9 175,208 + +1.7 175,216 - Shewana3_0151 0.10 +4.4 175,216 - Shewana3_0151 0.10 +3.4 175,231 - Shewana3_0151 0.11 +3.4 175,264 + Shewana3_0151 0.12 +1.5 175,272 - Shewana3_0151 0.13 +2.3 175,369 + Shewana3_0151 0.17 +1.1 175,407 + Shewana3_0151 0.19 +3.4 175,407 + Shewana3_0151 0.19 +1.3 175,407 + Shewana3_0151 0.19 +1.0 175,415 - Shewana3_0151 0.20 +0.0 175,415 - Shewana3_0151 0.20 +3.3 175,415 - Shewana3_0151 0.20 +1.0 175,493 - Shewana3_0151 0.23 +1.6 175,589 + Shewana3_0151 0.28 +3.6 175,794 + Shewana3_0151 0.38 +2.9 175,802 - Shewana3_0151 0.38 +3.8 175,802 - Shewana3_0151 0.38 +0.8 175,811 - Shewana3_0151 0.38 +0.3 175,953 + Shewana3_0151 0.45 +1.5
Or see this region's nucleotide sequence