Experiment: Thallium(I) acetate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3708 and Shew_3709 are separated by 416 nucleotides Shew_3709 and tdh are separated by 10 nucleotides
Shew_3708: Shew_3708 - TetR family transcriptional regulator (RefSeq), at 4,412,666 to 4,413,319
_3708
Shew_3709: Shew_3709 - 2-amino-3-ketobutyrate coenzyme A ligase (RefSeq), at 4,413,736 to 4,414,929
_3709
Shew_3710: tdh - L-threonine 3-dehydrogenase (RefSeq), at 4,414,940 to 4,415,965
tdh
Position (kb)
4413
4414
4415 Strain fitness (log2 ratio)
-2
-1
0
1 at 4412.920 kb on + strand, within Shew_3708 at 4412.920 kb on + strand, within Shew_3708 at 4412.920 kb on + strand, within Shew_3708 at 4412.920 kb on + strand, within Shew_3708 at 4412.920 kb on + strand, within Shew_3708 at 4412.928 kb on + strand, within Shew_3708 at 4412.928 kb on - strand, within Shew_3708 at 4413.012 kb on + strand, within Shew_3708 at 4413.012 kb on + strand, within Shew_3708 at 4413.012 kb on + strand, within Shew_3708 at 4413.039 kb on + strand, within Shew_3708 at 4413.045 kb on + strand, within Shew_3708 at 4413.160 kb on + strand, within Shew_3708 at 4413.168 kb on - strand, within Shew_3708 at 4413.168 kb on - strand, within Shew_3708 at 4413.292 kb on + strand at 4413.718 kb on + strand at 4413.796 kb on + strand at 4413.898 kb on - strand, within Shew_3709 at 4414.097 kb on - strand, within Shew_3709 at 4414.140 kb on - strand, within Shew_3709 at 4414.160 kb on + strand, within Shew_3709 at 4414.168 kb on - strand, within Shew_3709 at 4414.178 kb on - strand, within Shew_3709 at 4414.311 kb on + strand, within Shew_3709 at 4414.319 kb on - strand, within Shew_3709 at 4414.629 kb on + strand, within Shew_3709 at 4414.685 kb on + strand, within Shew_3709 at 4414.693 kb on - strand, within Shew_3709 at 4414.693 kb on - strand, within Shew_3709 at 4414.693 kb on - strand, within Shew_3709 at 4414.693 kb on - strand, within Shew_3709 at 4414.700 kb on + strand, within Shew_3709 at 4414.853 kb on - strand at 4415.009 kb on + strand at 4415.262 kb on - strand, within tdh at 4415.451 kb on + strand, within tdh at 4415.648 kb on + strand, within tdh at 4415.674 kb on + strand, within tdh at 4415.733 kb on - strand, within tdh
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml remove 4,412,920 + Shew_3708 0.39 -1.4 4,412,920 + Shew_3708 0.39 +0.4 4,412,920 + Shew_3708 0.39 -0.2 4,412,920 + Shew_3708 0.39 +1.6 4,412,920 + Shew_3708 0.39 -0.3 4,412,928 + Shew_3708 0.40 +0.5 4,412,928 - Shew_3708 0.40 +0.5 4,413,012 + Shew_3708 0.53 +1.1 4,413,012 + Shew_3708 0.53 -0.3 4,413,012 + Shew_3708 0.53 +0.3 4,413,039 + Shew_3708 0.57 -1.0 4,413,045 + Shew_3708 0.58 -0.2 4,413,160 + Shew_3708 0.76 -2.3 4,413,168 - Shew_3708 0.77 -0.3 4,413,168 - Shew_3708 0.77 -0.2 4,413,292 + +0.5 4,413,718 + -2.4 4,413,796 + -0.8 4,413,898 - Shew_3709 0.14 -0.4 4,414,097 - Shew_3709 0.30 -2.5 4,414,140 - Shew_3709 0.34 -1.2 4,414,160 + Shew_3709 0.36 -1.8 4,414,168 - Shew_3709 0.36 -2.5 4,414,178 - Shew_3709 0.37 -1.3 4,414,311 + Shew_3709 0.48 -1.9 4,414,319 - Shew_3709 0.49 -2.3 4,414,629 + Shew_3709 0.75 -1.0 4,414,685 + Shew_3709 0.79 -2.2 4,414,693 - Shew_3709 0.80 -1.5 4,414,693 - Shew_3709 0.80 -0.6 4,414,693 - Shew_3709 0.80 -1.8 4,414,693 - Shew_3709 0.80 -1.4 4,414,700 + Shew_3709 0.81 -0.5 4,414,853 - -1.1 4,415,009 + -1.6 4,415,262 - tdh Shew_3710 0.31 -1.8 4,415,451 + tdh Shew_3710 0.50 -2.0 4,415,648 + tdh Shew_3710 0.69 -1.1 4,415,674 + tdh Shew_3710 0.72 -1.3 4,415,733 - tdh Shew_3710 0.77 -2.1
Or see this region's nucleotide sequence