Strain Fitness in Shewanella loihica PV-4 around Shew_3430
Experiment: Thallium(I) acetate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Thallium(I) acetate 10 mg/ml |
---|---|---|---|---|---|
remove | |||||
4,094,112 | + | -0.2 | |||
4,094,767 | - | Shew_3430 | 0.44 | -1.8 | |
4,095,353 | + | Shew_3430 | 0.74 | -1.5 | |
4,095,487 | - | Shew_3430 | 0.80 | -2.8 | |
4,096,068 | + | -2.8 | |||
4,096,070 | + | -3.4 | |||
4,096,365 | + | aceE | Shew_3431 | 0.18 | -3.4 |
4,096,365 | + | aceE | Shew_3431 | 0.18 | -3.9 |
4,096,371 | + | aceE | Shew_3431 | 0.18 | -1.8 |
4,096,373 | - | aceE | Shew_3431 | 0.18 | -3.7 |
4,096,557 | + | aceE | Shew_3431 | 0.25 | -2.0 |
4,096,575 | - | aceE | Shew_3431 | 0.26 | -3.9 |
4,096,625 | + | aceE | Shew_3431 | 0.28 | -3.6 |
4,096,656 | - | aceE | Shew_3431 | 0.29 | -3.1 |
4,096,866 | - | aceE | Shew_3431 | 0.37 | -3.0 |
Or see this region's nucleotide sequence