Strain Fitness in Shewanella loihica PV-4 around Shew_3095

Experiment: Thallium(I) acetate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3093 and Shew_3094 are separated by 43 nucleotidesShew_3094 and Shew_3095 are separated by 29 nucleotidesShew_3095 and Shew_3096 are separated by 4 nucleotides Shew_3093: Shew_3093 - hypothetical protein (RefSeq), at 3,673,945 to 3,674,499 _3093 Shew_3094: Shew_3094 - hypothetical protein (RefSeq), at 3,674,543 to 3,675,304 _3094 Shew_3095: Shew_3095 - hypothetical protein (RefSeq), at 3,675,334 to 3,675,723 _3095 Shew_3096: Shew_3096 - metalloprotease MEP1-like protein (RefSeq), at 3,675,728 to 3,676,711 _3096 Position (kb) 3675 3676Strain fitness (log2 ratio) -1 0 1at 3674.461 kb on + strandat 3674.625 kb on + strand, within Shew_3094at 3674.630 kb on + strand, within Shew_3094at 3674.726 kb on + strand, within Shew_3094at 3674.795 kb on - strand, within Shew_3094at 3675.018 kb on - strand, within Shew_3094at 3675.099 kb on - strand, within Shew_3094at 3675.099 kb on - strand, within Shew_3094at 3675.231 kb on + strandat 3675.239 kb on - strandat 3675.390 kb on - strand, within Shew_3095at 3675.392 kb on - strand, within Shew_3095at 3675.522 kb on + strand, within Shew_3095at 3675.588 kb on + strand, within Shew_3095at 3675.637 kb on + strand, within Shew_3095at 3675.777 kb on + strandat 3675.785 kb on - strandat 3675.936 kb on + strand, within Shew_3096at 3675.957 kb on + strand, within Shew_3096at 3676.218 kb on - strand, within Shew_3096at 3676.218 kb on - strand, within Shew_3096at 3676.228 kb on - strand, within Shew_3096at 3676.336 kb on - strand, within Shew_3096at 3676.348 kb on - strand, within Shew_3096at 3676.622 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml
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3,674,461 + -0.2
3,674,625 + Shew_3094 0.11 +0.4
3,674,630 + Shew_3094 0.11 +0.5
3,674,726 + Shew_3094 0.24 -0.4
3,674,795 - Shew_3094 0.33 -0.7
3,675,018 - Shew_3094 0.62 +0.2
3,675,099 - Shew_3094 0.73 +0.7
3,675,099 - Shew_3094 0.73 +0.9
3,675,231 + -0.4
3,675,239 - +0.2
3,675,390 - Shew_3095 0.14 +1.3
3,675,392 - Shew_3095 0.15 +0.4
3,675,522 + Shew_3095 0.48 -1.4
3,675,588 + Shew_3095 0.65 +1.0
3,675,637 + Shew_3095 0.78 +0.5
3,675,777 + +0.4
3,675,785 - +0.5
3,675,936 + Shew_3096 0.21 +1.2
3,675,957 + Shew_3096 0.23 -0.1
3,676,218 - Shew_3096 0.50 -0.8
3,676,218 - Shew_3096 0.50 +0.8
3,676,228 - Shew_3096 0.51 -0.1
3,676,336 - Shew_3096 0.62 +0.0
3,676,348 - Shew_3096 0.63 +0.5
3,676,622 + -0.0

Or see this region's nucleotide sequence