Strain Fitness in Shewanella loihica PV-4 around Shew_3095
Experiment: Thallium(I) acetate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Thallium(I) acetate 10 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,674,461 | + | -0.2 | |||
3,674,625 | + | Shew_3094 | 0.11 | +0.4 | |
3,674,630 | + | Shew_3094 | 0.11 | +0.5 | |
3,674,726 | + | Shew_3094 | 0.24 | -0.4 | |
3,674,795 | - | Shew_3094 | 0.33 | -0.7 | |
3,675,018 | - | Shew_3094 | 0.62 | +0.2 | |
3,675,099 | - | Shew_3094 | 0.73 | +0.7 | |
3,675,099 | - | Shew_3094 | 0.73 | +0.9 | |
3,675,231 | + | -0.4 | |||
3,675,239 | - | +0.2 | |||
3,675,390 | - | Shew_3095 | 0.14 | +1.3 | |
3,675,392 | - | Shew_3095 | 0.15 | +0.4 | |
3,675,522 | + | Shew_3095 | 0.48 | -1.4 | |
3,675,588 | + | Shew_3095 | 0.65 | +1.0 | |
3,675,637 | + | Shew_3095 | 0.78 | +0.5 | |
3,675,777 | + | +0.4 | |||
3,675,785 | - | +0.5 | |||
3,675,936 | + | Shew_3096 | 0.21 | +1.2 | |
3,675,957 | + | Shew_3096 | 0.23 | -0.1 | |
3,676,218 | - | Shew_3096 | 0.50 | -0.8 | |
3,676,218 | - | Shew_3096 | 0.50 | +0.8 | |
3,676,228 | - | Shew_3096 | 0.51 | -0.1 | |
3,676,336 | - | Shew_3096 | 0.62 | +0.0 | |
3,676,348 | - | Shew_3096 | 0.63 | +0.5 | |
3,676,622 | + | -0.0 |
Or see this region's nucleotide sequence